HsaINT0187382 @ hg19
Intron Retention
Gene
ENSG00000198298 | ZNF485
Description
zinc finger protein 485 [Source:HGNC Symbol;Acc:23440]
Coordinates
chr10:44101855-44102522:+
Coord C1 exon
chr10:44101855-44101994
Coord A exon
chr10:44101995-44102444
Coord C2 exon
chr10:44102445-44102522
Length
450 bp
Sequences
Splice sites
5' ss Seq
TCGGTTCGT
5' ss Score
4.07
3' ss Seq
TTTCCTCTCTTCTTTCCCAGATT
3' ss Score
12.29
Exon sequences
Seq C1 exon
CACTTCCGCTTCCGGTCCAGCCTGTCTCCGCGTGGTGCGAGCGCTGCACCAGCCCCTGGCTGGTGGTTACTGTCCGAACGGCGTGGTGTGGTCGCTGACTCTCTGGGCGTGCAGCTCCGCAGCCCTGCCGGCTCGGTTCG
Seq A exon
GTTCGTGAGCGGCCGGGGTCAGGCTGGGTCCCTGAAGCCTCGAGCCCCTGGCGGGTGCTCCCCGCCTTTCCCAGGGGCGGGTCGAGGGGCGAGCCGGGGTGGGAGGGGAAGGCGGCGGTGGGCAGTGCCCACCCGCAGTGGCTGCGCCGTGTGGAGCGACCGCTCGAGGCTGGTGCATCACAGAGCGCTCCAGCCTTGCGCCCCGGCCGACAGATTGGGCCACTGACAAGGCCGTCCCCCGGTGCTGCCAAAAGTGTTTGGCGTGGAGCTGGCTGCAGTCCAGGCCGGATCCCAGCAGCCGTTCCCTTTCCTTTCTTCCCGAGCGTACCCACCTGGACCTGTCTGCCCACCTGTGGAGGGAACGGGCGGGCGGGGACCTGGTCTAGAGGGCAGATTCTAGCTAGGCTAGGGCACGGAGGGACTTCCTCAATTTCCTCTCTTCTTTCCCAG
Seq C2 exon
ATTGACTTACGCAGGATTCTCAGCCCTTGCCTGGGAGAACAGTTCAGGAGACAGATGGCCCCAAGAGCCCAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198298-ZNF485:NM_145312:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGGTCCAGCCTGTCTC
R:
CTGGATCTGGGCTCTTGGGG
Band lengths:
210-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)