HsaINT0187418 @ hg19
Intron Retention
Gene
ENSG00000197037 | ZNF498
Description
zinc finger protein 498 [Source:HGNC Symbol;Acc:21961]
Coordinates
chr7:99216148-99216755:+
Coord C1 exon
chr7:99216148-99216274
Coord A exon
chr7:99216275-99216670
Coord C2 exon
chr7:99216671-99216755
Length
396 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
CCTACTTATTTTCTTTCTAGAAC
3' ss Score
9.43
Exon sequences
Seq C1 exon
GTTGAGCGCACCATCACATCTAAGCCATCAGCAAGTTTGTTGGTTTTAATCTCCAAAATACGTCTTGATTTTGTCTGACTCTTTGCCACCACCCTGATCTAAGCCCTTATCATCTGCTTGAATCACT
Seq A exon
GTAAGTGCCATTTCCCTCTTGCCACCTCTAGCCTATTCCCTGTCAACACACAGGCAGAATGACTTTTATAAAACATGTAGTTCCTCGCTAAAGTAAGAAATAAGAATAAAGTTCATAATTCTTTCTGTGGCGCAGGCTCTGGGTGATCTGGTTTCTGTCTGCCTCTGCCACCTCTTCTGGTGCAGCTCTGCTCGTCACTGCTGAAGCCACACTGGGATATGGCTTGTTCTTGGACACCCAGAGTAATTTCTTAGCCTCAGGGCTTTTGCCTGGAATGCTCTTAGAATGACTGACTCATTCTCATCCTTGAGTCAGCCTGGTATCATGTCTTTAGAAAAGCCTTCTTCAAGTCAGTTGCCCCCTGTTAACAGAGCACCCTACTTATTTTCTTTCTAG
Seq C2 exon
AACTTGTCTCCACTTGCAGTTTTTAAAAGAGTTGCTTCCATTTGACTTTTTCTGTCTGCTGTACCAGCATATGAGTTTCAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197037-ZNF498:NM_145115:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGCACCATCACATCTAAGC
R:
CCTCCTGAAACTCATATGCTGGT
Band lengths:
208-604
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)