HsaINT0187440 @ hg19
Intron Retention
Gene
ENSG00000168813 | ZNF507
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:23783]
Coordinates
chr19:32836514-32838244:+
Coord C1 exon
chr19:32836514-32836689
Coord A exon
chr19:32836690-32838150
Coord C2 exon
chr19:32838151-32838244
Length
1461 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
ACTTTCGTTCTTGGCCACAGCTG
3' ss Score
8.55
Exon sequences
Seq C1 exon
TCACGTGATCCGTCCCCAGCGCCGCCATTTTGGAGCTCCGGATGAGGAGGGGGAAACCGGGGGAAAAGAGGGAAAAGAGCCGGGAGAGAGGTGGGCAAGGACGAGGGCGAGGGCACGGCCGGGTCCTGGCTGGCCAAACGAGGCTCGCGGAAGCAGCAGCCGCCGCCTGACCGCAG
Seq A exon
GTACCGCGCCCCGGGGCCGCCCCTCCGCCCGCTGTTAGCGCCGCCGCCGGCCATGTGCATCCTCCCCTCAGGCCTCTGCCGGCGCTCGCTTCCTCCTCAGCCGGCCGACCCCCGCCCGGTGCTAGCCACAAGCCCCAAGTTCCGTGTCCCGGTTCTGTCTTCTGTGCAGCAAGGCCTGCGGAGACTCTGGGCTTGCCCTGCAGCTGGGGGTGGGGGGAACTTGCTGCTCCCTGCATACTGTCACCAGCCCGGCCCGCCCGCAGGCGTTGCTTCCTTCTCCAGGCGTTGCTTCTTTCTGCAAATGTGAGATCGCTTAGGCCAGCCGGGATGGACCCAGCCACGATGTTCTCACAGCATCTTTTGATTAATTTTCTAAGCTCCCTCATTCCCGACCCATCACCTCAGTCCTTTAGCCAGTGCGTGGTGTAGAAAAAGCTACTACAGAAACGCAGCCCTGGTCTTCTGCATTTATTACCATCCTCTGGAGATAGAATGATGTCTCCAGAGATCACGGAGACCATCAGGGAAAGTTCCCACCTCTTAAGACCTGGGGGCATCGGAATGAATGGTTTGTGTAGAAGGCCGGGATGATTAATAAGGTGGCGGCCACTTTCCCAACCCCAAGGCGGTATTTTTAAGTTTCTGCAGTGGGCTGTAATTTGCTATCAGTCTGCATCGCTCTTCTCAGGCAATTACTGGATTTATCACCTCTTTGAGTTTGCACTTTCTCCAGTACTCCCCTCTCACTCAGAGTATGGGTTGCATTATTGATTAAAAGAAAGCCTGGCCCTTCATTCCTTTACCTCACTAACTCGTTGAAAATTAACTTCAGGGGAGCCCTAAAGATGTTTTTTCTGCCCTGGCAGTGAGCTATTTTACTTAACCGTAATCGATAAGGTAGTTGCATTCTAGGTGAAACGAATAAGCATTTTTTTATCTTTTAGATTTATTCCAGCCAGTATAAGAAACAGTGGCAAAGAAATGTAGGACCAGAGTAGGAAACTGCGTTAGAAGATATATAGGTCACACCACTGTGTCATATCTTTTTATGCTGTTTTTCTGCCTATTGTGCTTGGTTGCAGAATCACTCGTTAGATTGTATTTTTAGTTTAGATTAAAATAGCAATGTGCAATTTATTGTTCCATTCTCATTAGAAAATGTTGTCAGTAAAACCAATAGTGTTGAGTCCAGTACCTAAATTCTGAGGTAAAACAAAATACACAATTATTGGGAGAAGTTTCCAGAGCTATTTTTTCCTAACTTCTGCAAAATCCTCAAGTCGGCTTGTTAGATAAATTATTTAAATTTGCATTACGTAATAGGGTTGCATGAACATTCCTCTGAATTTCTTTTTACATGGAATATTGAGAAATTTTTCACTGCCAAAAAAAAAATCATTACTTTGTTTCACCAAGAAAGAGAAATGTTTTGATACTATATACTTTCGTTCTTGGCCACAG
Seq C2 exon
CTGGATTTTGAAGATTGATCCAAGGGACTGTATTAATTTCAGGAATTGATTTGAAAGACACTGGCTCTGCCACTTAACAGCCATGTAACCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168813-ZNF507:NM_001136156:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGATCCGTCCCCAGCG
R:
AGGTTACATGGCTGTTAAGTGGC
Band lengths:
264-1725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)