HsaINT0187501 @ hg19
Intron Retention
Gene
ENSG00000197363 | ZNF517
Description
zinc finger protein 517 [Source:HGNC Symbol;Acc:27984]
Coordinates
chr8:146029510-146034529:+
Coord C1 exon
chr8:146029510-146029623
Coord A exon
chr8:146029624-146032575
Coord C2 exon
chr8:146032576-146034529
Length
2952 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTTCTGTTCCTTCTCTCAGATT
3' ss Score
12.09
Exon sequences
Seq C1 exon
GCTTTCTTGTTGCCAAACCAGCACTGATCTCCCTATTGGAGCAAGGAGAGGAGCCGGGGGCCTTGATTCTGCAGGTGGCTGAACAGAGCGTGGCCAAAGCCAGCCTGTGCACAG
Seq A exon
GTGAGTACAAAGCACCCACAGGGCGTGTCCTGTGCTGCCAATGTGGCCTGGCCTCCGGGCAGCTCTGCAGGTCCCTTCTTCTACAGTGGGAGGTGTGTATGTTTAGCTCCTCACAGCAGGGCCAGATTTCCTACTAACTGCCTTGCTTGTAGGTCTAAGGTCAAAACTAACTTATGCAGGAAGACCCAAGTGCGAGAGTTTTCCATTTTGGTGTCCCCAAGGTGTCAGGGGCCGGGTCTGTGCTCACAGTGCCATTACCCTTGGGTTGTGTAGGGACCAGCCCTACAGGGTCTGTGGGTTTTTCTCCTCATGTGCAGAGACGAGAGATCATAGAAATAAAGACACAAGACAAAGAGATAGAAGAAAAGACAGCTGGGCCTGGGGGACCACTGCCACCAAGACATGGAGACTGGTAGTGGTCCTGAATGCCTGGCTGCGCTGTTATTTATTGGATACAAGGCGAAAGGGGCAGGGTAAAGAGTGTGAGTCATTTCCAATGATTGATAAGGTCATGTGAGTCACATGTTCACCGGACAGGGGGTCCTTCCCTGTTTGACAGCCGAGGCGGAGAGAGAGACAGGACAGCTTACGCCATTATTTCTTCTATGCATTTTAATGACTTTTAGTACTTTCACTAATTCTGTTACTGCTGTCTAGAAGGCAGAGCCAGGTGTACAGGGTGGAACATGAAAGTGAAACAGGAGCATGACCACTGAAACACAGCATCACAGGGAGACGGTCAGGCCTCAGCATGGCTGTGGGCGAGTTTGACTGATGTCAGGCCTTCCACAAGAGGTGGTGGAGCAGAGTCTTCTCTAACTACCCTGGGGAAAGGAAGACTCCCTTTCCAGGTCTGCTATGTAACTAGTGCCTTCCCAGGCACTGGGGTTACTGCTAGACCAAGGTCAACTAAGTAACGGGCGTCTTCCCAGGCACTGGCGTTACCGCTAGACCAAGGAGCCCTCTAGTGGCCCTGTCCGGGCGTGACAGAGGCTCACACTCTTGTCTTCTGGTCACTTCTCACTGTGTCCCTTCAGCTCCTATCTCTGTATGGCCTGGTTTTTCCTAGGTTATAATTGTAGAACAGAGATTATTATTATTATTATTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGAGCAGTGGCGCGATCTCAGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGAGGTTTCACCGTGTGAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCACCGCCTCGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCATTATTTTTTTTTTTGAGACGGAGTCTCGCACTTTGGCCCAGGCTGGCGCGTTCTCGGCTCACTGCAAGCTCCACCTCCCGGGTTCACGCCATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGACGCCCACCACCACGCCCAGCCAATTTTTTTTTTTGTATTTTTAATAGAGACGAGGTTTCACCATGTTAGCGAGGATGGTCTCGATCTCCTGACCTTGTGATCCGCCGCCTCGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCCAGAACAGAGATTATTATAATATTAGAATAAAGAGTAATGCTACAAGCTGATGACTAATACTATTCATATATCATCATATCTATAATCTCTTTCTAGTATAACTATTCTTATTTTATATATTTTCTTTATTACACTGGAACAGCTTGTGCCCTCGGTCTCTTGCCTTGGCACTTGGGAGGCTTGCTTGCCCACAGGTTGCTTTGGTTTCCTGGTTCCCTATGGCCCATGTGCCAGGGACTGAGCTCAGGGCAGTGGAGGCTGCAGAAAGAACCTTGAGCTGGGGAGGAGGCCCCCAGTCCCAGAGGTCTGCGCAGGCACCTGCTCTACGCACCTGCCCAGACATGTTTGCTGAGTGCAGGAACTGTGGGTGAACTCTGAAGGAGAGAGGAGTAAAGAACATGGCTGTGGGGTGAGGTACAACTTGCACCTCATGCCTGGCCTGTCTTCCCTGCCAGACCTTGGGCCTCTCCTATGGGCTCCCCTTGAGCTAGCCTCCCACAGTGCTGGAGCCATTATTAGCCTTTTTGTTCCCTTCTCACCCGAACCCTGATTTTATTTTATTTTTATTTTTATTATTTTTTTGAGACAAGAGTTTTGCTTTTGTCGCCCAGGCTGGAGTGCAGTGGTGCGGTCTTGGCTCACTGCAACCTCCGCTTCTTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCTCGCCACCGCACACAGATAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTGGCCAAGCTGGTTTTGAACTCCTGACCTCAGGTGATCGGCCCACCTCGGCCTCCCAAAGTGCTGAGATTAGAGGCGTGAGCCACTGGACCTGGCCTGAAACCCTGATTTTAAAACCTCTGGCAATAATTTCTCAAACCTCCCTACACGTCTAACAAAGACTCTGTCTTCACTTGATTGTGGTATCATTTCACAGTGTAGATGTTTATTGAATCATGTTGTACACCAAAAATATATACAAGTTTTGTTTTAAGACAGTCTCACTCTTTCGCCCAGGCTGGAGTGCAATGGCTCGATCTCGGCTCACTACAACCTCTGTCTCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGTATACAAGTTTTATTTGTCATTTATACCTCAGTAAAGCTGGGTGTTGGGGGAAGACTTGGGAATAAAAAGGTTATGTCTTCAAACAAGAAGTTCGTTTGTGAGTGTAGAGGCTGGATCATCCTTCCGTTTTCTGTTCCTTCTCTCAG
Seq C2 exon
ATTCCAGGATGGAGGCTGGGATCATGGAGTCTCCTCTGCAGAGAAAGCTCTCCAGGCAGGCAGGACTGCCGGGCACCGTGTGGGGGTGCCTCCCCTGGGGGCACCCTGTGGGGGGGCACCCTGCACCACCCCACCCGCATGGCGGTCCTGAGGACGGGTCAGATAAACCCACCCACCCCCGGGCTCGGGAGCACAGCGCCTCCCCAAGGGTTCTGCAGGAAGACCTGGGCCGGCCTGTGGGGAGCTCAGCCCCCCGCTACAGGTGCGTGTGCGGCAAGGCGTTCAGATACAACTCGCTGCTTCTCAGGCACCAGATCATCCACACCGGCGCCAAGCCCTTCCAGTGCACAGAGTGCGGGAAGGCCTTCAAGCAAAGCTCCATCCTGCTGCGGCACCAGCTGATCCACACTGAGGAGAAGCCGTTCCAGTGCGGCGAGTGCGGGAAGGCCTTCCGGCAGAGCACGCAGCTGGCTGCCCACCACCGCGTCCACACCCGCGAGCGGCCCTACGCATGCGGCGAGTGCGGCAAGGCCTTCAGCCGCAGCTCCCGGCTGCTGCAGCACCAGAAGTTCCACACCGGGGAGAAGCCCTTCGCGTGCACAGAGTGCGGCAAGGCGTTCTGCCGCAGGTTCACCCTCAACGAGCACGGCCGCATCCACAGCGGGGAGCGGCCCTACCGGTGCCTGCGGTGTGGGCAGCGCTTCATCCGAGGGTCCTCGCTCCTGAAGCACCACCGGCTGCACGCGCAGGAGGGTGCCCAGGACGGCGGCGTGGGGCAGGGCGCCCTGCTCGGAGCTGCGCAGAGGCCCCAGGCGGGGGACCCGCCCCACGAGTGCCCGGTGTGCGGGAGGCCGTTCCGACACAACTCCCTGCTGCTGCTGCACCTGCGCCTACACACGGGCGAGAAGCCGTTCGAGTGCGCGGAGTGCGGCAAGGCCTTCGGTCGCAAGTCCAACCTCACTCTGCACCAGAAGATCCACACCAAGGAGAAGCCCTTCGCGTGCACCGAGTGCGGCAAGGCGTTCCGCAGGAGCTACACGCTGAACGAGCACTACCGGCTCCACAGCGGCGAGAGGCCATACCGGTGCCGCGCCTGCGGGAGGGCCTGCAGCCGGCTGTCCACCCTCATCCAGCACCAGAAGGTGCACGGCCGCGAGCCCGGGGAGGACACAGAGGGCAGGCGGGCGCCCTGTTGGGCTTCCTGATGACGGGGACGACAGGCCGAGGATTCACGCTGGAAGCCCACCCAAGCCGGCGGGGCCCTAGCGCAGAAATTCAGAACCCCCTGTCCTGAAGGTGAAGCAAAGTCTAAAGAAAGGGCCAGCTCCCATCAGGAGCTCGGCTTCTTGCTCCAGCCGGGCACTGGGGAGGGAAAGGGCACCAGGCAGCCCGTGGTGTGGCCTCAGGAACCACTATCAGCCACCATTTCCTGGGGCCTTCCGGAAATGTCCAGGAGCGGGCAGAAGGGAGAGAGGGAGGGGCAGCTATGCTCAGTCCCCAAAGAGCAGGGCACAGGGGGCGCCACAGACGCATATGCAGCTGAGCTCCCCACAGGCCGGCCCGGGTCTTCGTGCAGAACCATTGGGCACAGCCAGGCCTTAGCGCCAGGCTCCGTGTGGCGGTCAATTCCAGGTGCTGTAAAGCCGACTAACAGGGTACAGGGAGCCTTAGCTGGCTGCCATGTCTCCTGCCTGTAATCCCATCACTTTGGGAGGCTGAGGTGGGAGGTTTGCTTAAGCCCAGGAGTTTGAGACCAGCTTGGGCAACATGGTGAAACTTCTCTACAAAAAATTTAAAAATAAGTCAGGTATCGTGGTCTGTGCCTGTACGCTGTAGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGGATGGGTTGAGCCTGGGAAGTCAAGGCTGCAGTGAGCTATGATAGCACCACGGCACTCCAACCTGGTTGACAGAGTGACACCCTGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197363-ZNF517:NM_213605:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.5),PF054957=zf-CHY=WD(100=20.9),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)