HsaINT0187584 @ hg38
Intron Retention
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr19:47531642-47532270:-
Coord C1 exon
chr19:47532128-47532270
Coord A exon
chr19:47531746-47532127
Coord C2 exon
chr19:47531642-47531745
Length
382 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGCT
5' ss Score
1.4
3' ss Seq
CATGTCCTTCTTGGAAACAGTGA
3' ss Score
5.1
Exon sequences
Seq C1 exon
ACATATCAATATAGGAAGCCGGTTTCAGGCAGAGATCCCGGAACTCCAGGAGAGATCCCTGGCTGGAACTGACGAGCATGTAGCTTCTCTGGTCTGGAAGCCATGGGGAGATATGATGATCAGCTCAGAGACACAGGATAGAG
Seq A exon
GTGGCTGAGGCTTTGGGGCTAAATTCCTAAGGGCCCTTCTTCCCCCTCCATTTCCAGGGTGTTTTTCCTCCTAGGTCTGGAACTCCTGACCGCTAGATCCAAGTAGTGTCCCCTGGGCGTGGGAGGGAGCTGGCTCTTGGCCAGCGTTGCTTCTTCCCTGCTGCACTCTCCCTCCCCTACCTCTTTTGTCACATGGTGGCTGGTCAGGCCATCAGGAGTGGGTGCTGGGGACAGGGTTCTGCTCTTCCTCCTTGTCCCTCCCTGAGATGCAGGAGAGAGAAGGGGAAGGCACCCCCTCTCTGCTGTCTTTCGGGAAAGGTTCCTCCCTAGCACCTGATGACTCCTGTGTGCCTCCTCTTCCTCATGTCCTTCTTGGAAACAG
Seq C2 exon
TGACCGAGCTCTGCAATGTGGCATGCTCCAGCGTGATGCCAGGAGGGGGCACCAACCTGGAGCTCGCTCTGCACTGCCTGCACGAGGCTCAGGGCAACGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156:ENST00000391901:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PU(79.3=93.9)
A:
NA
C2:
PF0144819=ELM2=PD(19.0=31.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATATCAATATAGGAAGCCGGTT
R:
CTGAACGTTGCCCTGAGCC
Band lengths:
247-629
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains