HsaINT0187642 @ hg38
Intron Retention
Gene
ENSG00000167785 | ZNF558
Description
zinc finger protein 558 [Source:HGNC Symbol;Acc:HGNC:26422]
Coordinates
chr19:8806170-8812643:-
Coord C1 exon
chr19:8812561-8812643
Coord A exon
chr19:8812064-8812560
Coord C2 exon
chr19:8806170-8812063
Length
497 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
ATTCATCTCTTAATCCACAGGAA
3' ss Score
9.62
Exon sequences
Seq C1 exon
ATTTGGAGACTCTACTTAAAGCCAAATGGTTAACTCCTAAGAAGAATGTTTTCAGAAAAGAACAGTCTAAAGGTGTAAAAACG
Seq A exon
GTAAGACTAACATGGGTGATTTCTGGTTTTCTACAGTAGGAGAATGCCTTAAGTTTAGAAAGGGCACAAAATAACCAGGAGAGGCATTAAAGGAAAGTGTCATTTATAATTGAGAATGCTGTGTTCCTGGAGAGACACTGTGAAAATTATAAATATTTAGAGAAGTGTGAGTTAGCTCCAAACTTATTTCTTCACGGAGAGTTCCCACAAGTAAATATTTCCTATCTGTGGCTCAGATATTGACTGTTGGAACAAAACTTCATCCACACGTTATCAGAAAATGTTTTGTGCATCTGATAAGGACTTGTGGCAAAGCATCTATGTTTTTTAACTTTCTTAGAGCTAAAACTGGGCAGAAATCACATACAACCACTGAAAGTAGCCAAAATATCAATTATAATAATGTAACAGAATTCCTGGGAGAGAAGATTCCTAGGAGAACATTAAGTATTTCAAATATTATAAATTATAGTTATCATTCATCTCTTAATCCACAG
Seq C2 exon
GAAAGAAGTCATCGTGGAGTGAAACTCAATGAATGTAATCAGTGTTTTAAAGTCTTCAGCACGAAATCTAACCTAACTCAGCACAAGAGAATTCATACTGGAGAAAAACCCTATGACTGTAGTCAATGTGGGAAGTCCTTCAGTAGCAGATCTTACCTTACTATTCATAAGAGAATCCATAATGGGGAGAAACCCTATGAATGCAATCACTGTGGGAAAGCATTTAGTGATCCCTCATCCCTTAGACTGCATTTGAGAATTCACACTGGAGAAAAACCCTATGAATGTAACCAGTGTTTTCACGTTTTCCGCACCAGTTGTAACCTCAAAAGCCACAAGAGGATTCACACGGGGGAGAATCACCATGAATGTAATCAGTGTGGAAAAGCTTTCAGCACAAGGTCCTCTCTCACTGGGCACAATAGCATTCATACAGGGGAGAAACCTTATGAATGTCACGATTGTGGGAAAACCTTCAGGAAGAGCTCCTATCTGACACAGCACGTAAGAACTCATACTGGAGAAAAACCCTATGAATGTAACGAGTGTGGGAAATCCTTCAGCAGTAGCTTTTCTCTTACTGTGCACAAGAGAATACATACCGGAGAGAAACCCTACGAGTGCAGTGACTGTGGAAAAGCCTTTAATAATCTCTCAGCTGTGAAGAAACACTTAAGAACTCACACTGGAGAAAAACCCTATGAATGTAATCATTGTGGGAAATCCTTCACAAGTAACTCCTATCTTTCTGTGCACAAGAGAATACATAATAGATGGATATGAATTACTGCAGGAACTTCTGGAGGAAAGCACTCATTGATCTTTCATCCCTAAGATAGTTTGAGAGAGCTCACACTGGATATATAAGTTATTTGTTGCAGCATAACAAATGATCCCCGCAAATTTTGTGGCTTCAAACACGAAATGTTTATTCTCTAACAATTTCTACAGATCAGGAATTCAAGAACAGCTTATCTCTGTAGTTACACTGCAGGATCTCTCATGCCTTTACTTACAATCAAGATGTCAGCCAAAGCTATAGTCATCTAACATCTTTACTGATGAACAGTCCACTTCCAAGATGACTTATTCACATGCCTGGAAAGTTGATGTTGGTTGTTGTCAGGGGACCTTCAGTCATTACCATGTAGGCCTCTTTACAAGGCCCAGCTCCTTGACAATTTGGCAATAAGTTCTCGCCAAGGTTAGTGATCCAAGAGAGGACCAATACAGAGGCCAAAATGGCTTTTATGACCTATCCTCAGGAGGACTGCTAAGCTTTCACTTATTTCCTATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGGAATTAATGAAGAAAAGCCCTCAGCACATCATCCTTCTACTCTAATCAATATGAAATAGCATTCAGTAACTCCTATTAATTCACTCTGAAGAGAAACCTTTTGAGGACAATCTGTATGGTAAAGCTCTCAGCTCGAATTCTCACCTTCATGGGCCCAGAAGATTATGTACTGAGAGAATCCTGAAGAATGGAACAGCTGTAGAAAGCCTTCAGTGCTATCAGCAGGGATTCATGTGACAGCTCACACTAAGGGAGAAAACCTGTGAAGGTCTCAGAAGGCTTCAGTGACAGTCATCCCTTAAGACGCACTGGAAATCACACAATGGAACAACACTCAGAAATGCGGAATACCCTACAGCAAAAGTGTTCACATTACTGAGCAAACTATAGTGTGGTATTCTGCAGTGACTATGGGAAAGCCTTGAATGTTCTATCGGTTTTTAAGGGACTTGAGAATTAATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTTTTTCTACATTTGTTAGGAAACTTGTGAGCATTCACACTACAGAGAAACTTGAAATATAAAGAAGAAGAGAAAGCCTTCAGTGATGCCTCTGTGTTAGGGAAAATATGGAACTTCTCCCTGGATGCAAAACCTATGAGTATATTAATATTGGAAAATTTTTCAGTGATTCTTCTCTTTCTTGTATATGAGAGAACTTATATGGAGAAACCCCTAGGAATGTAATCAGTGTTAGGATGCCTCAGCCTGAACTCTTCACTGAGTGGCCACAATTTTCACTGGGAACAAAAAGTATAATCACTGTTTTGAGTGTGGGATATCCTTTATCAGTGTCTCATCTGTAGATTGGACTGCTGGCTCATTAATTTTTTTAGTCTTTTTTTCTTTTAATATAAACATTTGTGTATAGCTGTTCCCTAAAATAAACATTAACATATTTCATAATTTTAATGCAATGTATTTATTATAATTAATTTGCTTGTTAAAGACATCCACACATTGCATATTCAAAAAGTTATTTCCAAATACCTTCTGAGTGATTCAGTTTATCATAATGGAAATTAGTATTTATAAACACATTTTTCTAATGTAGTGGTATTTTTGGCAGAGTACATGAGCTTTATGATACTGATTATTTTCTCTCTATCTTGGTATGCCAAATACTGTTGGTTTCTTTCCCAGTGTCCGTTCTCTTCAGTTTATTCGTTTAAAGAAACAAACATGTTGTTCAAGTTGTCTGTGAACAATATCGAAAGTTCTCAATCTTATAGTTTTTCCTGAAGCCCAGGCGGGTTTTTTCGCACTCCCCTGGCAATGAGAAGTAAGTCGAAGTCACTGTGTGGAACATCTCCTGGCTTGTTCTCCTCACATATTTTCCATTCACCTCACCCATTCTGTCTCTTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATGACAGAAACCAAAGTGCAGCCAAAAATCACAATGCTTTGGGCTCTCCAGGAGCCTCCGATTGGCTGCATCTGCTCTGGACTCCTTATTCTTATACTTCTTATGTGACTAAAAGAAACCCCTAGGCTGGGTGTGGTGGCTCACGCCTTTAATCCCAGCACTTTTGAGAGGCTGAGGTGGGTGGATCATGAGGTCAACAGATTGAGACCATCCTGGCCAACGTGGTGAAACCCTATCTCTACTAAAAGTATAAAGATTAGCTGGGTGTGGTGGTGCACACCTGTATTCCCAGCTACTCGGGAAACTGAGACAGGAGAATTGCCTGAACCTGGGAGGTAGAGGTTGCAGTGAGCCAAGATGGCGCCAGTGCACTCCAGCCTGGCAACAGAGCGAGACTCCATCTCAAAATAAACAAATAAATATTTTTAAAAAAAGAAACCCCTAACTGATTGAAGCCAACATGATCTGTTGTTTGTTTTTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTCAAGTTTTACCCATGTTGTTTCTTTGAAAACAATGTATATTCTCTAATATTTGGATATAGGGTATATGAACATTAATGCAACTTAATTGTATTTCCAAGTACAGTACGTATGTTCAGATTTCTTTTTCTAACCTTATTTAGTGATAGAGGTGTGGTAAACTCTTCCATTATGTTTATGTATTAACACTGTAATTTTGTCATTTTTATATATTTTGACATTATGTAACTAGATGCATACAGGATTAGGTATTCTGTATTCCTTTTTATGTGGAGATGATATTTTTACATAGCAAAGTATTGTAATGCATTAATAATAAATGGTCAAACATTTATTTATTTATTTATTTATTTTAGATGGAGTTTCACTCTTGTCATCAAGGGTGGAGTGCAATGGTGCGATCTCGGCTCACTGCAACCTTGGCCTCCCAGGTTCCAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCACCACGCCCAGGTAATTTTTTTATATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTAGTCTCGAACTCCTGATGGTCAGACATTTATATTGCACTTCCCATAGATCAGGCCCCCTTCTAAATGACATATAAGTATTAACTCAGTATGCATTATAAACTTAAGTATGTAATGTTATTATCCCCAGTTTACAGATGAGAAAACTGGTATGATACACTTAAGTTACTTGCCTGCATTCACTGACTGGTAAATGGTAGAGCCAAGATCTGAACCCAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGCCAGGCAAAGTTTTGCCATTGAAATACTTCACCTAATGGAGGAGGAACAGATTATAGAAAAATCAAGAAAATATGGTATTATAGAGTTATAGGAAAAAAAAGCATTTTAGGAGAGTTAAGGGGGGTTGGGAATAATAATTTTATATAACTAGGAAAAGAAAGCCTCTTGGTAAGGAGCATTTGAGCGGAGATCTCAACAAGTTGGGACAGTGAGTCATATGAATTTGTCTTGCAAGAGTAGTGTTGGCATGCAAAGGCCCACAACAAGGAGGCCAATACAGCTGGAGTGGAACAAAGGGGTGATGAGGGAGCAGTAAAAGATGATGTGGTCAGAGACATGGTAGATCCTGATCTTGTTGGGTTTTCTGAGACATTGTTAGGACTTTTCCTTATTTCAGTGAGTTGGCACATCAGTCAGGGTCCCAGCAGGAACTCAGGTTGACACCCACAGACTAGGACAATTCAAGTAGAGTTTTCATAAAGGGTCTACTCAGTCCTGTGGACAGGATCCAGGGAAACCACAAAAAGTTGTAAAGCACCCAGCAGCTTAGCAGGGCAGAGCTCTAACACCTCACAGCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGCTGCATTCCAGGAGCTGAGAGAGGTCAGTCAGCGATAGCATCCAGCCCCAGGTCCTCCTGCAGGAAATAGCCAGGGTCAGACCTCACTCTCCTTCATCCATTGAGACAGGAAAATATCCCCATTTATGAATATATAAATCAATAGCAGATCCAGAGACAATTTGGGTATTGGAGTTAGCAGACAAAGACTTTAAAATAACCAAGAATAATATGTTAAGGGAAATGGAGGAAACATGGACAAACCATAGAAAATGAGAGACAAACTGCAAATCTACCAAACAACCAAAGAAGAAGGACACATTGCTTTCAAAGCAGCATCAGTAAGACTAATGATGACTTTTCAAAAGAAACTATGGAAGCAAGAAGACAATGAATGACATCTGACATATAAAGGGTTAAATGGGTTGGAGGAGGGGGAAATTGTCAATCAAAAGTTCTGTAACCTAAGAAAATATTCTTCAAAACTGAAGGCAACAATGTTTTCCAATGGGAGGGAATATTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCATGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCCTCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGTGTGCTACCACGCCCAGCTAATTTTTGTATTTTTAGTGGAGACAGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCCTTTGACCTCACATGATTTGCCCACCTCGGTCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCGGCCTGGGAGGGATTTTTTTAAGCTGAGAGAATTAACAGCATAACCGTATTTTCAGAAACACTGAAGAGATTTCTTCAGGCTTCAGGAAAATGATTCCATAGAGACATACATAATTCCAGGAATTAAGATCAACAGGAAACATAAGATGCAAGTAAATATAAATCAGTACTGACTGTATAAAACAACCCTGTATAGTTTTACAACTTTTATGTATATCTAAACTTTCCAAAATAAAATGCTTTTAAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167785:ENST00000601372:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAAAGAACAGTCTAAAGGTGT
R:
TACAACTGGTGCGGAAAACGT
Band lengths:
354-851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains