HsaINT0187754 @ hg19
Intron Retention
Gene
ENSG00000196967 | ZNF585A
Description
zinc finger protein 585A [Source:HGNC Symbol;Acc:26305]
Coordinates
chr19:37660741-37663333:-
Coord C1 exon
chr19:37663284-37663333
Coord A exon
chr19:37660957-37663283
Coord C2 exon
chr19:37660741-37660956
Length
2327 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
TGGGAACATTGTCTTTCCAGGTT
3' ss Score
7.15
Exon sequences
Seq C1 exon
TGGGAGTCTGTGGTCAGTGACAGAGCCTGTAGGGTCAGTTATGGTGATCG
Seq A exon
GTGAGGACTGTAATCAGCTTGCTTTCTAACCTGAGTTGAAAGTTCAGCTTTTTAATTTTCAGTCTTCTTTAATATAAAAATTCTCAAGTTTTGGTGAATCTTTGTATTAAAAATTGTTCAAATCTAAGTGGTTTTTTCTTTGATCCATGAGTTATTTAGAAGTTCCTTTTTAAAGTAATGTCTGTTTAATGGTCAAATTGAAAAATTGCTTTATGACCTAGTTCGTGGTCAGTTTTCATGAATGTCACATCTATTACATAGAAACAGTGTACTATGTTCTCTAATTGTATTGTTATAGATATTAATTAAGCATATATTCAAAAAATATATCTGTCTCCTCACAGATTATTTTGTCTGCTTAATTACAGAGGAAGGTAAAGTACTCAACTCTGGAAAGGTTATTTGTCCATTTGTCCTTCTTTTTCTGCTTTATATATGTGAAATTATTAGGAATAACTATGTGCACTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAAGTTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAACCTCTGCCTAGTGGGTTCAACGGATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTAGAGGCACCCGCCACCACGCCCAGCTAATTTTTTGTATTTTTTAGTAGAGACGGGGATTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTACCTGCCTCCGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCATATGTGCATTTTTAATACTTTATAGATATGACTAAGTAGCTCAAAATATAACAATTCAAGCTTATACCAACAATTTATAAAATAACTCATTTTCCCAGATGCTTTTCCAGCAGTGGATATTGTTGCATTTTAAAAGTTTTTAAAATTTTGAGGGAAAATTATATCTAATTGCTCCAATGCATTTTCCAGTTACTAAAGTTGGCATCTTATTTGGTTAATTGCCATTTGTTTCCTTTTCTGTGAATTTTCATATCTTTTGTCCTACTTTTTTTTGTGGTATATTTTAACATAAAGTTAGGAAATATCATCTAATCAAAAGTATCTGATTTTTCTGTTACAGAGTCTGTGTTTCCTCTCACGTGTAATAAGATCCCTCCCAGCCCACCACAGTGTTATACACATGTATACTTCTAAAATTTATTTTAATAGTCTTTGTGATTTAACAAATACACATAATTAAGTGATCAGTCCTGCTGGCATTTGCCTACTGAATAGTGTGTGATGGAGATCTAGTTTGTTTTTTTCCAGGTGGCCAGCCAGTTATATCACTGCATTATATCACTGCCATTTATGCAATGAATGTCTTATGCACACTCATTTGAATACCACTTTTATCACATATATAGATCAATATTGTCTGGTATATTTATTGTTTTACTTGTTTTTATTACATTGTTTTTATATTGTTTTAATATCTGATAATGCATGGTAATCGCTGATATGTATTGTATGATTTTTGTGTGCCTGGGAGGTGTTGAGTACTTTACAAGTATTATCTCATTTAATTTTTGTAACTTTGAGATAAGCATTTTCATCCTCATTTCTGAAATTAAAAGTGAAGAAATGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGAGCGGATCAGGAGGTCAGGAGATCCAGACCATCCTGGCCAACATGGTGAAACCTCGTCTTTACCAAAAATTAGCTGGACATGGTGGCGCATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGCGACAGAGCGAGACTCCGTCTCAAAAGAAAGTGAAGAAACTTCTGTTCTCATAGGTGAAAAGTGTCAGAGCTGCAGTTCAAATCTGCAGTAACATTACTCCATCTCTCATGACTTTTCCCATATTTCACCGTAACTAATACCTATCACAGATTTTGTTAAATTTTATGTTCTCCTCAGCGCTGGTTCTCAAAGTGTGGTCCCTGTACTGACAGCATCAGCGTTTCCTGGGCACCAGTTAGAAACGAAACTTTTTGGGTTCTACTTTAGACCTACTGAATCAGAAACTGTGGAGTAGGCTGAGAATTTTTAACTGTGTTTCATTTAACAGGTCCTCCAGGTAACTTGAATGCATACCCATTTGAGAACCACTGCTTTGGTTTCTAGCTCAGGGACCTGCACCTTGATATATCCAGGAAGTGCTTATGTGTTGAATGTGAAATGACTGACTATGGGAACATTGTCTTTCCAG
Seq C2 exon
GTTTCTGGGTGTCTCTGGGGAGCCCCTGGGCCAGATTTTCCTCTAGACTCCAGCCCATCTCTTCAGAGCAGCTCTGCTTGAGTTCACAGATGACTGCCAAGCTTCAGACACCCTACAGAAAAAGGGTTGAGACCCAGTGTGGCCATGCCAGCTAATTGGACCTCACCTCAGAAATCCTCAGCCCTGGCTCCAGAGGATCATGGCAGCTCCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196967-ZNF585A:NM_199126:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.865
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)