HsaINT0187907 @ hg19
Intron Retention
Gene
ENSG00000172888 | ZNF621
Description
zinc finger protein 621 [Source:HGNC Symbol;Acc:24787]
Coordinates
chr3:40571700-40581043:+
Coord C1 exon
chr3:40571700-40571807
Coord A exon
chr3:40571808-40573520
Coord C2 exon
chr3:40573521-40581043
Length
1713 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTTGTGGTTTCTTTGGTCAGGTG
3' ss Score
7.24
Exon sequences
Seq C1 exon
TAGCGTTTCCATTCCCCAAACCTGCTCTGATCTCCCACCTGGAGAGAGGGGAAGCACCATGGGGCCCAGATCCCTGGGACACCGAGATTCTGAGAGGCATCAGTCAAG
Seq A exon
GTGAGTATGAGAATCCAGTGGTGAAGTTTCTTGTTTTGCCTTCCTGGTTTACTAGGTAAGAAGTGTTTCTTATGCTGCAGGGTACAAATCTCCCAGTTATTTATAAGTCGATACTCACTGTACTCTCTGACCTCACACTGAGTTCTGACCCTGAGCTTTGAAAGACCACCTCTGGGAGTACATGGCCTCATGCTGTCTGCACATTCATGTGGCTATCCTCCAAGGCAGAAAAGCTGTGACCCAGTAGCTCCTAAACCACTTCTTTCTTACTTACTGGTGGAAAAGTTTTAATTGTATGCCATTTTTCATTGCAAAGAAGTGGGGTTTCAGCCAAATTTAAGGAAAATATGATTTTTTGGGGCCAAACTGATTTATTTGTGCTATAGCTATAAATTTTACTTTAGGCCTTCAGCCCTGAAAAGAATGGCTTTAATTTGCCTTTTTAGTATCTAAATCACTTAAGAGTTTCATTTGCCATAATCTTTAGATCTACATTATATTTACCATAGATGGGACTGTAGAGGAAAGGGCTAGGAATATTCTCCCATCATAGCCCCCTACGCACACACATGCATACACACAAACACATGCACACACGCACATGTGCACACACACACCACCTAAAATTTCCCTGAGATGGCTTACCAGTCCTGGAAGGTTTTGTTTACTTGCGTTTCCATTTCTTCAGAAGAAAATTTTCAAGCCTTCTCACACATTTATGCTTTTGTATATAGTGGTTCCTTTAGCACAGGTACCACAGTGGCTTACAGCTCTCTGATCCAACTTCTGTTCCAGCTGACTTTCTGAAACTAATCATCTTGTATCCCTGAATATTGTGTGGGATATTTAAATATAGGATAATTAGGACATTGTTTAGAATTTGGGGTGATTGCCTGGGTTACAGGTAGGGCTTTGGGATCTAGTTTTTTCCTGGTTTGTGTTTCTCAGTCTGCAAGACCTCTTGTAGTGCTGGAGCTGCTTCTCTATTCTTCCCAGTCTCTCATTCCTTTCTCCTCTTCTGGGTTTCTGTCTCTCTTTAAACATTTTTCACATTTCTCACTGTTCTTTCTTATTCTCTCCTTCTTTTTTCTTTTTTGTCCCTCCTACCTTCTTTCCTTCTCATTCTTGATTCTCCTTCTTCCCATCACCTACCTTAGTTCAATTTTCCAGCCTTCCTCGTGGGGAGCACTTCCTGGCTATCTTTCCTGTTCCATTTCTGTGTCTTTACTTCTCCAATTCTATGTCATTATTTTTCTATTTTTTTAAGACAGGGTCTAGCTCCGCTGCCCAGGCTGAAGTGCAGTGGCATGATCTCCACTCACTGCAACCTCTGCCTCCCGGGCTTAAGTGATCCTCCCACCTCAGCCTCCCTAGTAGCTAGGACCACAGGGGTGCGCCACCATGCCCGGCTAATTTTTGTATTTTTTTGTGGAGATGGGGTTTCACCATGTTGCCCAGTCTGGTCTCGAACTCCTGAGCTCAAGCCATCCGCCTGCCTCAGCCTCCCAAAGTGCCAACATTACAGGCATGAGCCACCACACCTGGCCTGTCATTATTTTTCTTTGTCTCTCTCATCCTCCTTTATAGATGCTTGTATATAACCATTTCACAGGTATCTTTAAAAATTACATTCTACAAGAGAAAATTAGGAACACTGGATCCTACTTTTCTTCCAGTTTTGTAACTAGGAACACTTGTGGTTTCTTTGGTCAG
Seq C2 exon
GTGGTGAGTCCTGGATCAAAAATGAAGGGCTAGTTATAAAGCAGGAAGCCTCTGAAGAAACAGAGTTGCACAGAATGCCAGTAGGAGGACTTCTCAGGAACGTTTCTCAGCACTTTGATTTTAAAAGGAAGGCACTGAAGCAGACTTTCAATCTAAATCCAAATCTGATACTTCGAGGTGGAATGAAGTTCTATGAATGTAAAGAATGTGGGAAAATCTTCCGATATAACTCAAAGCTTATTCGGCATCAGATGAGTCATACTGGGGAAAAGCCCTTTAAGTGTAAGGAGTGTGGCAAAGCTTTCAAGTCCAGCTATGATTGTATTGTACATGAGAAAAACCACATTGGAGAAGGGCCCTATGAATGTAAGGAGTGTGGCAAAGGTTTGAGTTCCAACACAGCCTTGACTCAACATCAGAGGATCCACACTGGAGAGAAACCCTATGAATGTAAAGAGTGTGGAAAGGCTTTCCGTAGGAGTGCGGCATACCTGCAGCATCAGAGATTACACACGGGAGAGAAACTCTATAAATGTAAGGAATGTTGGAAAGCTTTCGGTTGTAGGTCACTTTTTATTGTCCATCAGAGAATTCATACTGGGGAGAAACCTTATCAATGTAAGGAGTGTGGCAAAGCCTTCACCCAGAAAATAGCCTCCATTCAGCATCAGAGAGTTCACACTGGGGAGAAGCCTTATGAATGTAAGGTGTGTGGGAAAGCCTTCAAATGGTATGGAAGTTTTGTTCAGCATCAGAAATTGCACCCTGTGGAGAAGAAGCCAGTCAAGGTCCTTGGGCCATCCCTGGTCAGTCCCCAGTGCTCCTCTCCAGCCATACCTCCTGTTCTTCTCCAGGGATCCTGTTCTGCTTCAGCCGTAGCTGTGCCTTCACTGACCTTTCCACATGCTGTGCTCATTCCTACCTCTGGGAATTTTTTCATGCTGCTGCCTACATCTGGAATACCTTCTTCATCTGCCCAAATAGTGCGTGTCTTCCAGGGTCTTACTCCCACTGTGAAACCTTCCCCAGTTATTCTCACCCCTTCTTCTCACTCCTCATGAGCTTTATCTTGGCAGTCTTACGGCTCTTATGCCTAGCAAATCTCCAGCCTAATTTTATATATTTTTTTGAGAAAGGGTCTTGCTCTGTCACCCAGGCTAGAGTGCGGTGGTGTGATCTTGGCTCACTGCAACCTCCCCCTCCTGGGTTCAAGCGATTCTCCTCCTTCAGACTCTCGAATAGCTGGGATTACAGGCACGCCTCACCACGCCCAGCTAATTTCTGTATTTTTAGAAGAGATGGGGTTTCGCCATCTTGGCCAGGCTGGTCTCAAACACCTGACCTCAAGTGATCCGCCTGCCTTGGCCCCCCAAAGTGCTGGGATTACAGGAGTGAGCCACTGTGCCCAGCCTCCAACCTAATTTGAGTTTCATTTGTATTTTTTTCATCACCTTACATGTGTTAACAGCTGTTTCAACATAAACTCCATTATAATCTATATACATTTAAAGACCGTGTTTACATAATCTCTTCTGGGTAGAAAATGGAAATACTTAACCTTTGCATTGGTCCCTTTCAGGCTTGAACAACAGTGGCTGTATCTGCATCGTGGGGTTGCTGGTGGTAGAACACTTTGGTGTTAGGAAAGTTTGGAAAAGAGGATATCCCTGTATTAGGCCATTATGATTAGAGATAAGCAGCCTGGGAGAAACATACAAGACCTGTGGCTACTGGTAGAGAATTGGAATAAGCTTCCAACAATGGACTGTAGAGATTAATGGAGATTGTTTAGTGGGCCCATGGCTAGGTGGGGTATTAATACAGTTGAAGTTATGTTGCCCTTGGCACAGATCTTTGAGAATCTCATACATCTGTGAAAAAGATAATGTGAAATAAACAGTAAAAAAAAAAAGTATGTTGATGGCAGTGAGAGTAATCATGTCTTTAAACGTGAAGTTTTTTTTTCTTTAGTTTTGCTCTTGATAGCTAGATGTTTCTTTTAACTTTTATTTCGTAAGTAAATATACACAAAGGCATTCATCTTTGTTGAATCTGTTGTGCAGATTTTTCTTGATGAGCATTCTGTTTTTTTTTCTTTGTGAGCACTGGCTTCTATATTTTATTTCATATTTATGAATTATAAATATGAATTTAATTACTAAAGAAATAAAAATAATGGTGTAAAGCCAACTCGAGGGGAATCTGAATAAGCTTCCAAAATTTTTTTTTTTAAGAAATAAAGGGAGCTGTGTAGTGGGTCAGTGGCTAGGTAGGTTAGTGAAGTGGAATTTGGGGTTGCTCTTGGAAGTGGCCTTGATGAGGATCCTTTACAACTATTCAGAGGACTGTGTGAAGTAGTTACTGGAAAAAGAACTTGAATTATGCATTTATTGGCATTAATGTAAACAGTAAGTCCTAAGCTTTGATGGAAGGGTCCATACATTTTTTTTTTTTTTTTGCTGATGTTGCTATCTAGATGTTTCTCTATAGCAATTAATAGCAAAACCTTTACATTCTTGGTTTTTAAACTTTACCATGTGTCTGAATTACATAGTGTGCTTGTAAAAAGAAGAGTTTTCTCTCTTGCACAAATTCTGATTTTGGCTATCTGTGGTGATGGCCAGATCTTTAGCATGGACCATACTTTGAGAGATATGCTTCAAACAGAAAATGCCCACCCCTCCTCCTTTACCCAGCATAAACTCTATGGTTAATTCTTAAAATAATGCCTTACAGTCTCCATTAACTCCCTTGCCCTTCTCTTGCTTTGTCATGCTCGCTTGGCAAAACCTCATCTCTGACTAAATGCAGTTCTTTGCCTTCTCTGTTCCTGCACCAAAAATGATCAGGAGAAAGCATATTACCAGGCTGAACTGTCACTTTAAATTCATGACCAGTAACTTCATGGAGGCCCTTAACGTTTCCTGATGGTCATACTACAATTTTTGGAGTCCACTTAACTCCCCTGCTTTCCTAGGCCACTACTTTATACTTTCTCTCTTCTGTAACTTCCAAAGCATCCCTCTCAGTTCTCATGCTCAGCTGATGGTTATGTTTCTGCCTTCGGCGAGAGAACAGCAAGCTCCAGAAAGTGGCTGCGCCTTCAGCCCCGTGCTAGAATGAGAACATATGGAGCCAACTTGAGTTCGGAAGGGCTGTGGCCACCTCGTTTCGCCCATCTACTTTTCACCTTGCCGTATCTGATTCTTCACCACCGTATTCTCAGTCACTTCCACTAAACAGTGCCAGTGTTTTAAGGTTCTGTCACACTCAGTAACCCACTTCTGGTTCCTCATTCCGTGTCAGTGATCAGCAGTAGACTGAAGAATCTACCTTAGATTTGCTCCATACTATTAATTAGCTTACAAAATGTCTAAGAGGAGCTAAGCTGGGATGCCACATAGGCAGAAGCCAGGAAAAATGACCAACCACAGAACCAAGTGGTTCCAGTGGAAACTCAGCAGCTGCTGGTGCCTGCTACTGGACTGCCACCCCCCATTGAAGAGACTGGACCACCAGGAAGGTCGTTTCACATTCTGTAGTAAAAATACCCCTACAATCATTTTGGTAGGGTCTTCTGTCTTCAGCCAGGGTGTACCTGCTCGGTGGGAGTTGGTTATATATGTATGTCCAAGTTGCAGGGGCTTCTGGGAAATACAGGTTTTGGATTCTGCCTGGGAAGAGAGTCATAGTATGAAGAAGTCTGAAAATGGGGAAGGGATTTTCAGAATATGTTGAGCAGCTGTAAAATATCAGATACCCATTATAGGCATTGAAGGTTACCTAAATGACAGAAGGATGCACTATATTCATGGGTAGGAAAGATTAGTTTCATCAAGATTTCAATTTTTATCAATTCATAAATTAAAAACAATATAAAAATTCCAGAGGGGTGTGTGTATAGAGAGGCAAAGGACACAGAGTAGCTAACCTAGTTTTGAAGAACAAGATGGGGGGTTTTATGCTACCAGATATTATATACAATGATCATCAAACACAGAACAAAGCAAAAAACAAACTCCCCAAACCCAAGTTGAAACAAAAAAAACCCCCAGACTGTAATAGTATTATTATTATTTTTTAAGATGGAATCTTGCTCTGTTGCTCAGGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACCTACACCTCCCGGGTTCAAGTGATTCTCTTGCCTCAGCCTCCTGAGTAGTGTGTGCCACCACGCCCAGCTAATTTTTTAATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGGCAGCCTCAAGTGATCCACCCACCTCGGTCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACTGCACCTGGCCTGTAACATGATTTGCTGAAATTTTTAAAAATCTTAAATAATGTACTGTTTAGAAATATACATATTTTATACAAAATTATAAAGAAAGCATAGAGAGGTAAGCATTAGTGGCACAGCTGAGAAAATATAAAAGGTAGTTCTGTCTCTATCCTGTCTCCTTTATTCTGCTACTGCTCTCATTCTGTCTCATCCCAGGAATCCAGTCCCAAGTGCTGCCTGCCAATCGTCCAGCACCCTCCACCTTTGCCACCTATTTCTTGTTGTAAAACAGATGTTTGTTTCTAAAATATAATGAATTAATGATTATCAAAGTACAGGCATACCTCATTTTATTGCAGTTTGTTTTATTGTGTCTTGCGGATATTGCATTTTTTACAAACTGAAGGTTTGTGGCAGGCCTGTGTTGAGCAAGACTATCAGTGCCATTTTTTTTCAACAGCATGTGCTCATTTCATTTTTCTGTGTCTTACACAGAAACTTAAAATATTTCAAACTTTTCATTATATGTGTTTTGGTGATTAGTGACTTTTATGTTTCTATTGTAATTGTTTTGGGGTGCCACAGACTGCATCCATCTAAGACAGTGAGCTTAGTTGATGTGTGTGTGTGTGTTCTGATTACTCCACTAACTGATGGTTCCCCATCTCTCTCCCTCTCCTCAGACCTCACTATTCTCTCAGACACAACAGTATTGAAATTAGACCAATTGATAACCTTACAAACACCTTTAAGTGTTTAAGTGAAAAAGTCACATGCCTCTCACTTTAAATCAAAAGCTAGAAATGATTAAGCTTAGTGAGGAAGGCTAATGTCAACAGCTGAGATAGGCCAAAAGCTAGACTGCTTCTGCCAAACAGTCAAGTTGTGAATGCAAAAGAAAAGTTCTTGAAGGAAATGAAAAGTACTTCTCCAGGGAACACATGAACGATAATAAAGTGGCCAGGTGCAGTGGCTGACACCTAGAATCCCAGCACTTCGGGGAGCCAAAGCGGGAGGATCCCCTGAAGCCAGGAGTCCGAGACCAGCTTGGGCCACAAAGTGAGACCCCTGTCTCTACAAAAAATTAAAAATTTAGCTGGGTGTGGTTGTGCATGCCTGTAGTCCGATCTACTTGGGAGGCTGAAGTGAGAGGATCCCTTTAGCCAGGGAGTTCGAGACTGCAGTGAGCTATGATTGTGCCACTGCACTCTAGCCTGTGTGACAGAATGAAACCAAAAAAAGTGAAACAGCATTATTACTGATATGGAGAAAGTTTTAGGGGTCTGGATCAAACCAACCACAAATTCCCTTAAGCCAAAACCTAATCCAGAGCAAGGCCATAACTGCCATTGTATGAAGGCTGAGAGAAGTGAGGAAGCTGCAGGAAAGTTTGAAGCTAGCAGAGGTTGGTTCATGAGGTTTAAGAAGTCATCTTATCATAAAAGTGCAAGGTGAAGCAGCAAGTGCTGGTGTAGAAGCTGTAGCAATTTATCCAGATCTAGCTAAGTTAATTGATGAAGTTGCTACACCACGAGATTTTCAGTGTATTCCAAACAGCCTTCTTTTGGAAGAAGAAACCATCTAGGACTTTCATGGAGAAGAGAAGTTAATCCCTGGCTTAAAAGCATCAAAGGACAGCTCGTCTCTCTTGTTAGGGGTTCATGCAGCTGGTAACTTTAAGTTGAAGCCAATGCTCATTTACCATTCAGAAAATCCTAGGGCCCATAAGAATTATGCTAAATCCACTCTGCCTGTGCTCTAGAAATGGAAGATCAAAGCCTGGATGACAGCACATCTGTTTACAGCATGGATTACTGAATATTTTAAGCCCACTGTTGAGACCTACTAAATATTAGGAAAAAAGAATTCTGTCAGGTGTGGTGGCTCACACTTGTAATCCCAACACTTTGGGAGGCCAAGGCAGGTGGATCAGTTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCTATCTCTACTAAAAATACAAAAATTAGCTGGATGTGGTGGTGTGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAATCCAGAGGCAGAGGTTGCAGTGAGCTGAGGTTGCACCACTGTGCTTCAGCCTGGGTAACAGAGTGAGACTGTCTCAAAAAAAAAAAAAATTTAGTTCCAAATATTACTGCTCGTTGATAATGTGTCTGGTCACCCAAGAGTTCTGATGGAGATGTACAAAGAGATTAATGTTTTTATGTCTGCTAAACAACATCCATTCTGCAGGATCCATTACTCCATGGGTCAAGGAGTAATTTTGACTTTCAAGTATTATTTAAGGAATACATTTTGTAAGGCTGTGGCTGCCATAGTGGTTGTTCTGTACAAAGTAACTTGAAAACCTTCTGGAAAGGATTCATCATTCTAGATGCCATTAAGGACATTTGTGATTCATGGGAGAAGGTCAAAATATCAACATTAACAGGAGTTCAGAAGACATTGACCTCAACCCTGATGGATGATCTTGAGGGGTTCAAGACTTCAGTGGACGAAGTAACTGCAGATGTGGTGGAAATAGCAAGATAACTAGACTTAGAAGTGGAACCTGCATATGTGACTGAATTGCTGCAATCTCATGATAAAACGTGAACAAATGAGGAGTTGCTTCTAATATAAGAGCCACAAAAGTGGTTTCTTGAGATGGAAACTACTCCTGGTGAAGATCCTGTGACCATTGTTGAAATGACAACAAAGGACTTAGAATATTACATAAACTTAGTTGATAAAACAGCAGCAGAGTTTGAGAGGATTGACTTCAATTTTGAAGAATGTTCCACTGTGGGTAAAAGGCTATCCAACAGCAACACATGCTACAGATAAATCTTTCGGAAAGGAAGAGTCAGTTGATGTTGCAGCCTTCCTTGTTGTCTCATTTAAAGAAATCTCTAGAGCCACACTAACCTTCAGCAACCACCACACCGATCATTCAGCAGCCATCAACAGTGAGGCAAGACTGTCTTCCAGCAACAAAGACTCACTGAAGACTTAGATTATCGTTAACATCTTTTAGCAATAAAATATTTTTAAATTAAAGTATGTACATTGTCAGATATAATGCTATTGCAAACTTAATAGACTATAATATAGATTAAACATAACTTTTATAGGTACTGGAAAATAAAAATAATTGTGTGACTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172888-ZNF621:NM_001098414:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.3),PF097235=Zn-ribbon_8=WD(100=13.1),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF097235=Zn-ribbon_8=WD(100=13.7),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCGAGATTCTGAGAGGCA
R:
GCTGGACTTGAAAGCTTTGCC
Band lengths:
344-2057
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)