HsaINT0187915 @ hg38
Intron Retention
Gene
ENSG00000197566 | ZNF624
Description
zinc finger protein 624 [Source:HGNC Symbol;Acc:HGNC:29254]
Coordinates
chr17:16649658-16653853:-
Coord C1 exon
chr17:16653764-16653853
Coord A exon
chr17:16649747-16653763
Coord C2 exon
chr17:16649658-16649746
Length
4017 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
GGCTTATTTCTCTTCCTTAGGTA
3' ss Score
10.56
Exon sequences
Seq C1 exon
GAGGCCGGCACCGCCGAGCCGCCGCCATTGCTGGAAGCGTTCCCGCCCTGCTCTGCGAGTTCCCTCAGTTGTCCTCAGTTCGGCCGCCAG
Seq A exon
GTACTCGTTGTCCCGGGCGCCTGGCCTCGGTTGCCCGCCGCCCCTCCCTTGGCGCTTGGCTCCCGGCGGCGTCCGGGGCGTGGCCGTTCCCTCTAGAGCCCCTGTCCCTGAGCGGACCCGCCCACTCCTGAGAGGCGATTGGGGCTGGGCCTCCTTCCCGAGTGTGGGTTCAGTCTCCAGCTGGCCTCCCTCACAGGTAGGGCCGCGTGCCCTATGCGGCCTCCTAGTCCGGGTCCAAACCCGGGAACCCCCTCCCTGCGGGCCTGGCGGCGCTGGGGTTAAAAAGAGCCGGGCGCAGGGCGCAGGGAGTCGAGTAGGGCGGGCGGGCCCCTGACCCGACTTTCCCGGTCTTCCCAGCCCCGCGCCTTGCAGGCCCTGAGGAGGGCATACCCGAAGTGGGTAGAGGAGAGCAGTTAGGGAAAGAAGGCGAGGTTGGCAGGAGCATATCCGCTCTGGCTTCTGAACTGGCAGGGATGGAACTAGGTTCCACATCGGGGGACCTGCGCTACTCAGTAACCGAGGCAGCTTTTCCTGAAATGTCACATTTCAAATACTGTAATCACCTTTTAATCACTTGTCACTCCCTGACATGACAATGGTATTATTGCATTGGTTGGGAAATGCTGGACTGGTACATGGCGCTGAGATTCTCAGCAAAAACATGGACCCTTCATTATTTCTAAATAACTGCACTGGCCAAGGAAGCAAAACAAGTAAAGTTTCTCCTTAAGTCTCTGGATACGTTTGCAATAGTTGGAAAGACAGAGCTTGTAAATAGGGAAATTATAACTGGGGAATAGTGGCCTAGATATCTTCTGCATAATGACAAAGGGGACAGTAGAAACATATAAGGTGGCTACTGTCATGTACTAATAGCTGATTCGTTGTGCTCAAGTGACTTGCCTGTGGTCACAGTTTTACGGTAGCCAAAGCAGGGTTAGAACCTGGGGATGTGGCCAGCCACTCTGGGATTTTATTCCTATTCCACACTCCTATGTATAGGTAGATACTTCTTCTTGTCTGCTTGGAGAGTACAGAAAAGCAGAAAGAAGGGTAAACATCACAGCCCCAGGTCTCAGAGGTCTCAGTAGAGTTTTGGGTTACTCAGTCTTTTTTTCTATGCATTACATTTGCACAATTGAGATCAAGCTGAATATATTAAATGTTAAATATTGTTTATTCTAATTATAAAATAAAACAAGGGATTTATTGTAGTTTGGTTGTTAAACATATGTTACGAGCATAATCTACATAATCTACATAAAGTATTGCCAAAGAGTTTATTAATATTTACAAATATTTTAAAAATGATGACTCAGCTCACTCTTGATAAATGTTAAAGATGCAGAAAACCATTACTCTAGACCTTCGGAATTGAAAATGCCTTATGTTGCTCTTTGTAGGTCTGCTTTAGTGTTCGGGGGTTGCGGGATGGGGCAATATTCTTGGCTCATTTTTTTTCTTTGCAACCTTGTAAAACTTGGGGGTCAGTGTATGGGCTTGGGAGGGAGAGTCAGTTTTCAAGCTCTCTGAAGTAATATGCAACATCATATATGCATGTGCATTATTTTGTGGACAAGGTCAGATTCTCAGATGGGTCCGTACCCCCCCAAAAATTAAGATTTACTGGTATGCATAGATTGTGTAGTGGTGAGATCAGGGCTTTCAGGGTATCTGTCCCTAGAATAACGTACATTATACCCATTAAGTAATTCCTTATTCTCCACCCCCCTCCCACTCCTTCACCCTTCAGAATCCCTATTGTGTAACAGGCAATATTTCTTAAAATATTACACTAAAACTAAAACATTATATAATTTAACATTATATAATTAACATGTTAACATTATATTAAACTAAATATTTCTTAAGGTGTACTTGTTCAAGCTGTATATTTCTGTGCCTCACATCTAGAGATCCTGATTTTGATCTTGGATGGGGCCAAATAATTTCCTTTTTAATAAGCATATCCAGTGAGTTTTTTGCATTCTCAGATTTGAGACCCCTCTAGTTATACATGTGGCGTTTTCATTAGAAAACAGGAGAGGAGTCATAATTTTCATTAGATTTGCAAAAGGCTCTATGACAGAAAAATCTAGAGAAACACTGGCATAAGGCAAAACCACTTACTGGTTACCTTGAGGCTTCAATACAGGAATCCCCTCAGACTATTCTTTCTTTACCTCTTTTATCTCCACACTGTACCGCTTTCCTCCCTCAACTTCTCATTGTTTCTCTTCCACCAAAACCTTTTCATTGTGCCTAGGAAAGCCCCAGTGTCATGAAACAGGTCACTCTACATTTTTAAGATACTCACTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTGTGTCGCCCAGGCAGGAGTGCAGTGACACAATCTCTGCTCACTGCAACCTCCACCTCCCAAGTTCAAGCAATTCTAGTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGTGCACCACCACACCTGGCTGATCATTTTGTATTTTTTAGTAGAGTCAGGGTTTCACCGTGTCAGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGCTCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTATGAGCCACCATGCCCAGCCAAGATATTTACATATTTTCTTGATTTAACTAACCCTGGTCTCCTCCTTGAGTTAATACATTAATCTGACAGTATATGTTTCAGTATACCCATATCTAGTTAATTTTTATATCTCTAATATTCTTTGCATTCTTGATAACCTTGCTTTATATATTCTTGTTTTTCAGAGAATAATGGTTAAGTACTTCAAGTATCTTTTCAGATGAGCTTCTGATTGTTAGACACTGTAAGGTTAGATTAAGTTCTGCTATGTTTATTGAGCAAAGCTACTGAACGTTATGAGAAGCAAGGTGCACATTCAGGGAAGGAGCAGATTCCACATGTTTAAGCATAACAAAGGCCCTACTTGCAGGACCATATAATTGCTTATAACACTTTTTGTACAAAAACTTAATACTTATTATGTCACTGCCCTCATGAATAAAGATTCATGAGGCTAGTATTACCATCCTAGAAGAATTTATATTGACAATCTGTACTGTTTGATATCCTACATCAGGCACTCCTGGTTCTTGAACCAAACTCAGCCTCAGCAAGGCCATACATATCATTAGCCAAAGGTAGAAAAGCAGGGCCCAAGCATCCCTGGAAAAGATCTCTGCCACCCTGTTGCTCCATAGGATAAAACTTTTATTAGGTATATACTTTTTTTTCAATATAAAAAGACTATAGCTTAATGCTTTGTGCACTGAATTTCATGTCTCTTCTATTATTATTATTATTATTATTATTATACCTGCTTCCTTTTTGTTTAAGTTTGCCTGATATAGAAAGGATAAAGATCTATTTGAATATCAGATTCGGAGGGGTAAATCAAGATTTCCAATATCATTTAAATTTTGAAGTCGTAGTGTTCTCTTTACATGAAACAGATCTCTGAAAATGTTAGGAAATAGACTCTTCGTGGGAAAGGCAAGAAAAGGAGATTCTTAGAATATTTAATTGTTAGATGAGTAAGTGATTGTGGCAAAGAAAGACTGAAGTATTTTTTTTCGTACTTCACACAGCATGTTGATTCAGTGGAAAAGGTATGGGCTTTGGAATTAGATTGATTTGGGGTCATGTATCTGCATGGCCTTGGGTACTTTAATTTTTTTAGGTTCAGTTTCCTCATCTATGGAATGGGAATATTATTCCTACTAGGTTGATGTGAAAATAAAATGAGAAAGTATTTTAAAACCTCCTTGTACAATGGCTAGCCTGTTAGTTGTGACTATAGTTAACAGTGCTAAAATCTTGAGCTCTGCCGGAGCAAGGGTCTTTGTCCCTCACTGATCTTAAGGGTTACTCTTGTGCTTCCTTAGGGAGGTCATGCTCACTTGTATGTCAGGATTCCAACTTGGTGAGTCTGAAATTCCCCAGGCAGGATTGGTTTCCATGGCTTATTTCTCTTCCTTAG
Seq C2 exon
GTATGTCTTTGCAAGACTCCACTCTTTCCAGAGAGGGGAAACCAGAGGGAGAGATTATGGCTGCTGTGTTTTTCTCAGTTGGACGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197566:ENST00000311331:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.414
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains