HsaINT0187965 @ hg19
Intron Retention
Gene
ENSG00000121864 | ZNF639
Description
zinc finger protein 639 [Source:HGNC Symbol;Acc:30950]
Coordinates
chr3:179041551-179043110:+
Coord C1 exon
chr3:179041551-179041632
Coord A exon
chr3:179041633-179042829
Coord C2 exon
chr3:179042830-179043110
Length
1197 bp
Sequences
Splice sites
5' ss Seq
ACGGTGCTT
5' ss Score
3.15
3' ss Seq
TTTCTTTCTTTCTTTTTTAGACA
3' ss Score
12.07
Exon sequences
Seq C1 exon
CAACGAGTTGTAGCCGCGGAGAGCAGGCGTCGATGCTGGCGCCCAAAGCCTCCAGCCTGAGAGTCGCCTCACTCGTGTGACG
Seq A exon
GTGCTTAGAAACCCCCTTTTTTGGTTTTGTCTTTAAGTACTGTCTAGGGAAACGAATCATTTGAAGCAGTTTATGCCTTTTTTGTTTTTTTCGAAGAGAAAGATTTATGCCGGACTGAAAAATAGCGAATCAAGTATTTAGTGACCGTGTGATATTGCAGTAAAGACTGCCTCCACGTTGGACATGTAGTGGATTCTAGTTCAGGCTCTCCTGCAACATGTTTTTGTTTCAATTCTTTTACAATTTAAAGCATATGCTTATTTTAATGAGAACGAAAAAGAAAGCTTAACTCTTTTTAAACTCGTTAAAAATGGAGTTATTTACTGTAAAGACGTCTTACAGCAATTAGGAAGAATATACATTGCATGAAAGGCCTTTTGAAACGTTTATCTATTTGATGATTGCTGACTGCCTGTTGTATGTATTCTATTTTGTGCATAGACTTTCTTGTTGGTTGAAAAAAATGACAGGTGGAAAGATGTTGGTTTCTAGGTGATATAAAAAATTTTTAAACATTTTTCTGATTTTTCTGCAGTGACACGTGTTACATATGTCGTTTGTATTTCAGAGGGAGGGGGGACTGTGATAGGTTGCTTGTGATTCAGAATCTTCCTGCTAAGAAGACTAGTGAGCAAATGTTTATGACATCCTTGAGTAGAAAGCTAAGTTTTTTCAAGGCTGTTATGCACACAAAAGGCACATAAAAATGATTGCTAAAATGAAGGATGGTTAGCATTTTTGGTCTTGAGTAGGCATCACCATTGTGCTGAAAGGAAGTCCGATAGACATTTGGTTATCGTTCGGCCCTAAGTAGGAGTCAGACCCTTCCTGATCCGTGTGCCTCCTCCTCTCACCTAACAGCCTGAATCCAGGCCAGCTTGCAACGTTGATTTTAATACCACGCTTGGTTTCCTTTTCTTACTTTTATTCTTCAAGTTGCAAAGAACTTGAGATGCATTCTGAAATAACAAGAGACTACTTAACATGTTCGGCTGAGTGTTTTCAGTGTTCTCCCTGATACTTTTAGAGTATTTAGAACATGAAGTGTGAAGCTTTGGGCTATATGAATCGTAATAGCTCTTCTCTTTTTGATTTTTGAATGCAGTGAATTGAGATGGTTACTCAAGGAATGATTGTTTACATTGTTAGGTGAGGCGTTTGATTTTATTCTTTTTTCTTTCTTTCTTTCTTTTTTAG
Seq C2 exon
ACAGAGTTTCACTCCTGTTACCCAGGCTGGAGGACAATGATGTGATCTCGGGTCACCACAACCTCCGCCTCCCGGATTCAAGCGATTCTCATGCCTCAGCCTCCCGAGTAGCTCAGATTACAGGCATGTGCCACCACGCCCGGCTAATTTTGTATTTTCAGTCGAGACGGGGTTTCCCCATGTTGGTCAGGCTAGTCTTGAATTCCCGACCTCAGGTGATCTGTTCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCACTGCACCCGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121864-ZNF639:NM_016331:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGAGTTGTAGCCGCGG
R:
GGTTCACGCCTGTAATCCCAG
Band lengths:
348-1545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)