HsaINT0188149 @ hg38
Intron Retention
Gene
ENSG00000185730 | ZNF696
Description
zinc finger protein 696 [Source:HGNC Symbol;Acc:HGNC:25872]
Coordinates
chr8:143291389-143293065:+
Coord C1 exon
chr8:143291389-143291767
Coord A exon
chr8:143291768-143292971
Coord C2 exon
chr8:143292972-143293065
Length
1204 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
CTTTTCTTTTACCTAAGCAGAAA
3' ss Score
6.89
Exon sequences
Seq C1 exon
GTTTCCGGCGCGCGACGGGGCGGGGACCGTAGCGGGTGCAGTCCAGCTGCTCTGGACGCTGAGGCCCCGGCTTCTCTTGCTGGGGTGTCGATTCGGGAGGGCTGAGGGCGCGGCCGAGAGAACGGGGCGGTCACCGCCGCCGTGGCCCGCGCGTCCCGCGCTCTCCTTGCAGTGCAGGCCCCAGCCGCTCTCGGGCGCGGCGTGGGGGAGGCGGCCCTGCAGGTGCGTACCCGGGGTCCGACACGTGCGGGGCTTCCTGCGAGCTGAGTCCCCGCTGCGCGTCTTCAGGCCTTTGTAAGTTGTCAAATTTCCCACCGGCCCAGCTCATCGAGCTTCTTCCCAGCTGTGAACAGGAGGGCCTGTTCCCTAATTCTTGCCG
Seq A exon
GTAAGGTACTTGCAAAAATCTGCTTCCAGACTAAAAAATTGCACTTTAAATTACCTTTTTGTAAAAGCGGCGGGGTCTCGCTATGTTTCCCAGGCTGGCCTCCTACTCCTGGGCTCAAGCGATCCTCCCGCTCAGCCTCCCTGGCAGGCGGGATTACAGGCGGCTTAAATTAAATTTACTAATTAATCACTTTATTTACTTATTTTTTTAAGACAGGGTCTCACTCCAACGCCCAGCTGGAGTGCAGTGGCGAAATCTCGGTTCACCCCAGCCTAGACCTCCTGGGCTCAGGCAGTCCTCCCACCTCAGCCTCCCTAGTAGCTGGGACTACAGACGCCCACCATCACACCTGGCTAATTTTTTGATTTTTTGTAGAGACGGGGTCTCACTATGTTGCCCAGGCTGGTCAGGAACTCTTGTAATCAGTCAGTCCTCCATCCTGAGCCTTTTGAAGTGCTAGGATTACAACTGTGAGCCACAGCACCCAGCCAAATTACATTTCTTAATTGCACTTGAGGTGAGACCTAAAAAAATGTATTGCCTACTGGTTTTTCTTCTTTGTGAGTTACCTATTCATGATCTTTGCCAATTTTCCTTCCTTTCTCATTAATATATAGAGGTCTTTATCAGATAGGGATGAATCTTTGCATTGCACGTATTCCTCCCTTTTTGGTTTTTTTTTTTTACATTAAATTTTTTTATGTAGTTGAATTTGTCAGACATCTGATGTCAGGCTTAGAAAAATCATTCCTCATTCCAAAACTTTACCATTCAAATAAGTTGTTCTTTTCTTCTGGTTTAACATTTTTATATTCAAATCCTTATAACTACCAAGAAAATTTTAAAACCCATGGGAATTTCTCTAGACATTTGAAGACTGCTGGAGGGCGCGGGCTTCCTCAGCATGGAGCTAGGAAGCTGTGGCCACGCCCACCTGTGCTCTGCGTCAGCCCTGGGTGGAGGGGGACCCGCAGAGCCTGGACCAGAGTTCCTGGGCATCCCACAGAACAGAACACCCGCTTCTGGGAGTGTCTGTTGAGCCAGGACCTTGATTGCTAGTGACAGGAGTGGGCCCAGCTGGGTGATGCAGCTCCCACAGGGCCTGTTCTGACAGTTTCCTCTGAAGGCATTCTGACCTCACTGCCCCTGGCCCCTGTACCTAGCCCTGGCTGTGATTTATTTTCCTTTTCTTTTACCTAAGCAG
Seq C2 exon
AAATTGTTCCAACTGCTGGTGTTCTGCAAGATGGAGCCAGGAGGAGAGCCCACAGGTGCTAAAGAGAGCAGTACCCTGATGGAGTCCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185730:ENST00000330143:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.858
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGCTGGGGTGTCGATTC
R:
TCTCCTCCTGGCTCCATCTTG
Band lengths:
353-1557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains