HsaINT0188150 @ hg19
Intron Retention
Gene
ENSG00000185730 | ZNF696
Description
zinc finger protein 696 [Source:HGNC Symbol;Acc:25872]
Coordinates
chr8:144375142-144382120:+
Coord C1 exon
chr8:144375142-144375235
Coord A exon
chr8:144375236-144377909
Coord C2 exon
chr8:144377910-144382120
Length
2674 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTGTCTGGCCTCTTTTTCAGCTG
3' ss Score
10.44
Exon sequences
Seq C1 exon
AAATTGTTCCAACTGCTGGTGTTCTGCAAGATGGAGCCAGGAGGAGAGCCCACAGGTGCTAAAGAGAGCAGTACCCTGATGGAGTCCCTTGCAG
Seq A exon
GTGAGGGGACATGTCCACAGTCGGGCCCAGAGTTCCAGGGCAGGAATTGAACAGGAATACAGGAAAAACACCATGTCTCAGTCACTGACGCAGAGCATATACTGTGTCCTTGGGCGCAGGGTGAGGGAGGGAGGTAAACGCAGGCCCATCAGATCTCCTGGGCATCTGTTTGGTGACTGTCTTTGCCAGTGAACTGAGAGCTTTTGGTTAGAAAGTCTGGCAGCCCCAGGCTCTGCCTCTGGGAAGGTCTCTCTCTCAGTGCTTCTCCACCTTGGCACCGTGGCTGTTTTGGAATGGACGAGTCTTTGTTGAGGGGCCATCCTGTGTGTTGTAGGACGTTCGGCAGCACCCTCGCCTCTGCCCACTTGGTGTCAGTAGGGCCCCCTCCCAGTTGTGACAATCCAAAACATCTCCACACATTGTCAAATGTGCCCTCAGGACAAAATCGCCCCCATGAGAACACTGCTTTATGTTTTGGGGCCACCCTGAGAGTGTGTCACAGCAACAGCCCGGGAGATGGCGTGGGCAGTGCAGGCCCTGCTGTGAGGTCTGGGATTGCCTCCATCGGAAAGGCGTCCTTGGGGCCTGCAGGCTGGATCCAGTAGAGCTCCACCACGTATGTGTCCCCTTCTCACCATAGTCTTGGTTCTTTTTCCTCATAAGCAATACCTTTGAGTCAGTTCTTGAACTTCCAAGTCTGCAAACCACAAGACCAGGGCTGGGCCTCTGCCAAGGGGCTTCTGTTCTGCAGGCCGCCCTGAGCGCCTCCCGCCCCCTGGCTGCTCAGTGTCAGGGGTCTGCAAGGGCAGAGAGAGGTGGGGACTGTCGATAGCAGCCTGCTCTCATCTGCCCTGGAACATCCCTGCCCCACCCCCACCTCCACAGGAGCTTCCGTCTTATCTGCGCCCTCCACATTCTTGAGAGGTGCAGCTGGGACTCAGCCGCTTCTCCTCTGCTGCCACAGCGGACTGCCTGCAGACTGAGAAGTCCTCCTCAGTTGCTGTGCTGGCCTCGTTGGCCCCCCTCCTCCTGCTGCCCCTCCTGGCTGAGTCCTCCTGCCTCCTATGCAGGCCAAGCTCAGTTGCCAGCTTTCTCATGTCCCAGGGTTTCACCCCTACCCCTTAAGCCTTTTTTCTAAATGGCCACATGGTCTGTCCCTGTGAGCCAGTGGAACCAAATCTAACCAGTGGCTTGACTGCCAGACAAGGGCCATTGATAACGCAGCCTGGATGGGGTTGCTCAGCCTGACCAGCGCCGCCGCCGCCCAGCCCACATGGGACGTGGGTTGCTGCTTCCAGCTCTTGTTCCGGATTTCTTTTCTTTTCTTTTTTTTTTTTTTAAGACAAAGTCTTGCTCTGTCGCCAGGCTGGAGTGCAGTGGCGCCAGCTCACTGCAATCTCCACCTCCTGGATTCAAGTGATTCTTCTGCCTCAGCCTCTCAAGTAGCTGGGACTACAGGTGTGCACCACCACACCCAGCTAATTTTTGTATTTTTATTAGAGATAGGGTTTCACCTAATCTTGATCTCTTGACCTCGTGAACTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGACTGGCCTCTTGGTCCGGATTTCTGTCTGAGTGAGGACGCTCCTGTTTGCACATAACAGAAGCCCTTAGAGTTTGGTGTTTGGGGGCAGTTGTTAAGGAGTCTGCGTTGTCTCAGGGAGTCCAAGGTAAAAGGAATGAGCTGGGGCCATGGCTGGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTAGGAGGCTCAGGTGGGAGGAGGGTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCAACACATTGACACACTGTCTCTACAAAAAATTTTTAAAATAGCCTGGTGTGGTGGTGCTCACCTGGAGGTGCGCCACCTACTTGGGAGGCGGAGGGAGGATCACTTGAGCCCTGAGGCTGCAGTGAGCCATGATGGTACCACTGCACTCCAGCCTGGGTGATAGAGCAAGACCCTGGCTCACAAGAAAGGAAGGAAGGACAGACAGAAGGCAGAGCTGGGCCGTGGGCTCTGTTGGGTGCCACTGTCCCCGGGCCTCCTGCTACATCTGCCTCGCTCCCGTCCTGGCTTGCTGCCAGCTGTCTCCAGCCTCCTTTGCTTTCCCAGCTGTCCCGCAGAGTAAGGCAGTGCCCAGAGCCTGCGTTTCTGTCCCCTCCCCTCCCAGGACTGGGTGGGCCGAGGCTAGAGGTTTAGCCCTGTTTCTAGCCCCGTTTAGCCTCGTTTCTGTTTGTATATTTTTAAAATTCTATTTTTTTAAGAGACAGGATCTCACTATGTTGGCCAGGCTGGTCTTGAACTCCAAGTCTCAAGTGGTCCTCCTGCCTCAGCCTCTGAAAGTGCGGAGATACAGGTGTGAGTCACCACATCCGGCCCCACAGCCCCGTTTCTGGAGTGGCAGTGCAGGATTCTCGTCTACCTCATAACCATGGGGGTTAAGAAGGTGGGGAGGAGAAAAAAACTAAAAAAAACGAGGCGGGAACTGAATGGGCAAAATCAAAGGTGTCTGTGGCACACTGACGTCACCATCACTGTCACTCTGTCGTCACCACGATTGCCAGAGCCACCCTCGACTCACGTTCTCTTACATCTAAAATCGTTCCTGTCTGGCCTCTTTTTCAG
Seq C2 exon
CTGTGAAGGCTGCTTTCCTGGCGCAGGCCCCGAGTGGCAGCCGGTCAGCCGAGGTGCAGGCAGCTCAGAGCACGGAGCCTGCCGCAGAGGCAGGCGCTCCCGAGGGAGAGGGCCACAGAGGGGGGCCTCCCCGGGCGTTGGGGTCTCTTGGCCTTTGTGAAAACCAGGAAGCCAGAGAGAGGCCCGGAGGTTCCCCTCGAGGCCCGGTCACTTCTGAGAAAACTGGAGGACAGAGTGGCCTCGAGTCAGACGTCCCTCCGAACGCAGGCCCCGGCGCAGAGGGCGGGGGCAGCTGGAAGGGGCGGCCTTTCCCGTGCGGCGCCTGTGGCCGCAGCTTCAAGTGCTCCTCGGACGCGGCAAAGCACCGGAGCATCCACTCGGGGGAGAAACCGTACGAGTGCAGCGACTGCGGGAAGGCCTTCATCCACAGCTCGCACGTGGTCCGGCACCAGCGGGCGCACAGCGGGGAGAGGCCCTACGCGTGCGCCGAGTGCGGCAAGGCCTTCGGCCAGAGCTTCAACCTCCTCCGGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACGCGTGCGCCGACTGCGGCAAGGCCTTCGGCCAGAGGTCGGACGCCGCCAAGCACCGCCGCACCCACACCGGGGAGAGGCTGTACGCGTGCGGCGAGTGCGGGAAGCGCTTCCTGCACAGCTCGAACGTGGTCCGGCACCGGCGGACCCACCACGGGGAGAACCCGTACGAGTGCCGGGAGTGCGGCCAGGCCTTCAGCCAGAGCTCCAACCTCCTCCAGCACCAGCGCGTGCACACGGGGGAGCGGCCCTTCGCCTGCCAGGACTGCGGCCGCGCCTTCAGCCGCAGCTCCTTCCTCCGCGAGCACCGCCGCATCCACACCGGGGAGAAGCCCCACCAGTGCGGCCACTGCGGGCGCGCGTTCCGGGCGCTGTCGGGCTTCTTCCGGCACCAGCGACTCCACACGGGCGAGAAGCCGTTCCGCTGCACCGAGTGCGGCCGCGCCTTCCGCCTGAGCTTCCACCTCATCCAGCACCGGCGGGTGCATGGCGCCGAGTGAGCCGGGGCTGCGGCGGAAGAGATGCCGGCGGCCTGGTGGGCGCGAGGCCGAGGCCGGGGGAGGCTCCTGTCCGCCCCGTGCGCGGTGAGGAAGTAACAGCCGGCTGCGCGCCTGGTTCTCGGGTTGCGAAAGCCTCGCCAGGCCTGCATCCGCCTTGGCTTGGGAGCAATCAGGAGAGACAGGGCTCGGGGAAGGCGAGCGCTGCCCGCGGGAGGCGATTCCCAGAGGCGGGGAGGTCTCAGGGGTCTGTCCCGGGCCGGCCGCCCGCCTCTGAGACTCCCCGCCTCCCACGGTCAGCTGCTGCGGGGCAGTGGCCGGTGATTGAATCGGTCATTCCTCCGCAACCAGGCCTCCATCAAAACCCTGCATGAGATGAGGGCCTCGGGCTTCGGGTTGGTGAAGGCGGGGTGGGGGGGCAGTTAGGAAGGGGGCGCCCAGACAGGGCATGGAAGCCTCGCGTCCTCCCCCGTACCTTGCGGGTCGGTGGTTCATCCATGTATTTCAACGCCTTTTCACAGCCGGTTCATATGGTCCCGACTTCTGTGTGCTTAGAAAATTATGGAACTTGGCCGGGTGCGGTGGCTCCCGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGCGGGCGGATCACACGGTCAAGAGATCAAGACCATCCTGGCCAACATGGCAAAACCCCCATCTCGACTAAAAATACAAAAAATTAATTGGGCGTGGTGGCGTGCGCCTGTAATCTCAGCTACTTGGGAGCCTGGGGCAGGAGAATCACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCGGAGATCTGGGCACTGTACTTTAGCCTGGGCGACAGAGAGACCCATCTCAAAAAAAAAATTGGAACCTGAGAAGGGGGTCGTGGGGTCCCCGGGGCCCACCGTCTGCACTTGGCATCTGAAGTCGGGGTGGTCTTGTGGGACTGACCCCTTACCCTGTGGGTTCTGCACTAGCTCCGGGCAATTGGTGACAGAATCGAGTTAAATTGTAGGACATCGCGTTGGTGTCTGAGAGGGAGTTGGAGAGCTGGTTGGTGTGGAGGGAAAGGCTTACACACATGTGATTTCAGAAGCGTTCTGTGGGTAGAGGAATCGTTTTCTCTTTGAGACTGTTATGAGTATGTACAAATGTTATTTCCTGTAAAATATTTTCATTTTTTAAAATGTTATTTTCTAGATAGAAAAGTAGAAGTGTCTCTTTGGGGAGCGTTTTTGGGGGCGTATAGTAAAGCTCTGTCATCATGAATTAAGCGAGGTGGGCTTTGAGTTTCTTGGGATGACAGGGAAATGTGAGCCGCCTACTGGCCGTGAGCCCCTGGGGTGCGGTTGCAGGATTCGCCCATCCTGGTCTGGGTGTGGCTTGTGACCACCTCCTGCAGTTCTCTGCCCAGGTAAGGACTAATTGGGAAGAATTCTGGGTCCTGAGCTGGCTGCCGCTTCCAAGACAGTCGCTTTGAGGGCTCTTGGCACCGATTTTGTTAAAATGCATGAGCTTAGGGTTGTGCAGCCTGTAGGGGCAGGGGTGGTCTCAGAATGGATTTGGTGGCCCCACCGTTAATTAAGCTCCTGACCCCTGGGCCGGTGGTGAGGTGGGAAGATGAGCCTGTGTCTCCCATGCTGAGCCAAGATCCTCAGGTACCAGTAGCGGTCAAAGCACCTGCTCCCTGAAGGAAGCTTACCTGGCTTAGCCTCATTCCTGCTCGTAAGTCAGGCATTCAGCTTGCAAAGATCCCCAAGCACACAAGGAGAGTCAGCTGACTGAGGGCCAACAGAAACAGCAGGCAGCCGCTGTCAGCCACAAAGAAACGCAGATCCTGAAACTGTCATCATACAGGTGAGAGGATAGTTATGTGTGAGGTGTTCAAAGAAGTCGCGCAGTCAGTGATGAGAAAGCTGTAGGGTACATACTGTCACGCATGAATAGGCAGGACTCCTTAAAGAACTTTTGGAAATGAAAAACAGGCCAGGTGCAGTGGTTCATGCCTATAATCCCAACACTTTGGGAGGCCTAAGGGGGAGGATCACTTGAGCCTAGGAGTTCAAGACCAGCCTAGGCAACATAGGGCTGGGCACGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCTGAGGCAGTGGATCACCTGAGGTCAGGAGTTTGAGACCACCCTGGCCAACATGGCAAAACCCCATTTCTACTAAAAATACAAAATTAGCTGGGCATGGTGGCCCACACCTGTAATCCCAGCTACTCGGGCAGCTGAGGCAGGAGAATCCCTTGAACCTGGGAGGCAGAAGATGCAGTGAGCCGAGATCACGCCATTGCACTCCAGCCTGGGCAAAAAGAGCAAAACTCCATCTTAAAAAAATAAATAAATAAAGGAAAATGAGCCGAGTGATGGTCTTAGATATAAGATGGAATGGCAAGCAAATAAAATTATAAATATGAATACATATGTATATATAAAAGAATAGTGTCAACTAAAATACTAGACAACAATAGCATGTAAATTAGAAGGGACAGAAATGTTCTAAGACCCTCCGGTTGTTGGGAAGAGGGTGTAAGATAGTGTTTAATTTGACTTTGATAAGTTAAATGTGCATAGTGTAATTTAATGTTAATTACTAAAAGAGTGTAACCAGTCTATACATCTCTAATCCAATAAAAAGAATAAAACACTGTGATTTAAAATGTAGTCCCAGCTGCTTGGGAGACTGAGGCAGGAGGATCTCGGCTTGGATCCTCAGACCAGGAGTTTGAGGCAGCAGTGAGCTACGATTGTGCCGCTGCACTCCAGACTGGACAACACAGTGAGAGCCCATAAAATAAATAAATGAACTGAACACAAACTTCTGTCAATTAAAAAATAAGAACGAAATCAGGCTGGGCCTGAGCGCTGTGGCTCACACCTGTAATCCCAGCACTTTGGAGGCCAAGGTGGGTGGATCGCTTAAGCCCAGGAGTTCGAAACCAGCCTGGGCAACATAGGGAGAACCTGTCTCTACAAAAAATACAGTAAGTAAGCCTATAGTTCCAGCCACCCAGGAGGCTGAGGTGGGAGGATCACCTGAGCCTGGGAGCTCGAGACTGCAGTGAGCTGTAGTCATACCACTACACTCCAGCCTGGGCAAAAGAGTGAGACCCTCTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185730-ZNF696:NM_030895:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.880 A=NA C2=0.564
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=7.1)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)