HsaINT0188154 @ hg38
Intron Retention
Gene
ENSG00000196110 | ZNF699
Description
zinc finger protein 699 [Source:HGNC Symbol;Acc:HGNC:24750]
Coordinates
chr19:9297880-9302504:-
Coord C1 exon
chr19:9302378-9302504
Coord A exon
chr19:9297991-9302377
Coord C2 exon
chr19:9297880-9297990
Length
4387 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
ATGCCTTTCTGCTTGTGCAGGGT
3' ss Score
8.68
Exon sequences
Seq C1 exon
GACTCAGTAGTCTTTGAGGATGTGGCTGTGGACTTTACCCAGGAGGAATGGGCTTTGCTGGATCTTGCTCAGAGAAACCTCTACAGAGATGTGATGCTGGAAAACTTCCAGAACCTGGCCTCACTAG
Seq A exon
GTAAGAATGGCAAGATTCTTTCATGTAGTTGTTTAGAAAGTTATTTTATCTCACTAAATTGACTTTATTCTAGGATTTGGGCTGAGGAATGGGAAGACATTGGTAAGTAAGACAGATATGGTCACTGACCCCAAGGAACTTACAGTCTAGTGGCTTTGCTATGAAAATAAACACCTGGGCCGGGCGCAGTGCTCATGCCTGTAATCCCAGCATTTTGGGAGGCTAAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGATACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAACACAAAATTAGCCAGGCGTGGTGGTGCATGCTTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCTTGAACCCAGGAGGTGGAGGTTACGGTGAGCCAAGATCGCTCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAAAAAAAAAAAAGAAAAAAGAAAATAAACATCTGTATATTGAACTGATGCTTTTTTTCGTGGTTGAAAGCCTTGAGGTTTATTAAGTATCGAAAGTGTGGGTATAAACCTCAGCAATCACTATAGGACACAGGGAGGAGGTTTGTAGTTTGAACATTTTGAGGATTTTACTGCTATCTGTGTCCTTTACCCAAAGACTACCAGAACACACTTATAGTTAAACAAGTTGGGTTTATTTTGCAGTGCAGCAAGCAAGAATACATGCCTCTTACATGTCCTAGTAAGATGGTGTTAGAAAAGACCTATTACAGGATTTGTGCTTCAGTTGAGTGATTTGGGGATGGGTCTATGGAAGCAGGCTGTATTAGTTTCCTAGACCTTCTGTAGCAGAGTATCACACACTGGTGGCTAAAAACAACGGAAATTTTTTCCTTCACAGCATTTCTGGAGGCTGGGTATCTGAAATCAAGGGATCAGCAGGGCCATGTTCTCTCTGAAGGCTCTGGGGGAAAGACTCCCTTTTCTCTTCCTGGCTTCTGGTGATTGCTGGCAATCATTGGCATTCCTTGACTTACAGATGCATCATTCCATTCTCTGCCTTCTCCTTCTTGCCTGTGTGTCTAAGTCTCTGTCTCCTTATAAGGACACCAGTCATTGGATTTAGGGCCCATCCTAATCCAGTATAACCTTGTCTTGATTATATCTGTAAAGACCCTATTTCTAAATAAGGTAACATTTTGAGGTTCTGGGTGGACTTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTTTTTGTAGGCTTTATTATTATTTTTAGAGCAATTTTAGGTTCACAGCTGAATTGAGTGGAAGGTACAGAGATTTCCCGTATAACCTCTGGCTCCCACATGCATAGCCTCCTCTAATAACAACATCCCCCACCAGAGTGGTAAATTTGTTATAACTGATGAAGCTACATTGACACGTCATCATTGCCCAGAGTCCATCATTTACATTAGGGTTCACTCTTGGTATTGTACATTCTATGAGTTTGGAAGAATATATAATGACATGTATCCACCATTATAATATCATACAGAATAGTTTCACTGCTGTAAAAATCCTGTGTGCTCTATCAATTCATCCCTCCTTCCCTCCCTCTTAAATCTTGGCAACTACTGATCTTTCTGTCTCCATAATGATGTTGCCTTCTGCAAAATGTCATATAGTTGGAATCATGCAGTATGTAGCCTTTTCAGATTGGCTTCTTTCACTTAGCAATATACATTTAAGATTCCTCCATGTCTTTTCATAGCTTGAGAGCTCATTTCTTTGTACCTCTGACTAATATTCTATTGTCTGGATGTACCACGGTTTATCCATTCACCTACTGAAGGACTTCTTGGTTGCTTACACGTTTTGGCAGTTACAAATAAAGCTACTATGAACATTGGTGTGCAGGTTTTTATGTGGACTTAAGTTTTCAACTCCTTTGGGTAAAAGGAGTGCAATTCAGTTGCTGGATTTTATGGTAAGAGGATGTTTAATTTTATAAGAAACTGCCAGCCGGGCGCGGTGGCTCATGCCTGTAATCCTAGTACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAGGGTGAAACTCCATCTGTACTAAAAATACAAAAAATTAGCCGGGTGTGTTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCTGGGAGGCAGAGCTTGCAGTGAGCTGAGATCACACCACTGCACTCCAGCCTGGGCGACAGAGCGAGCATTCCAGCCAGCAATGAATGAGAGTTCCTGTTGCTCCTCATCCTCACCAGCATTTGTTGTTGTGAATGTTCAGGATTTTGGCCATTCTAACAGGTGTGTAGTGGTGCCTTGTTTTAATTTGCATTTCCCTGATGACTTATGATGTTGAGCATCTTTTCATATGCTTATTTGCCATCTGTATATGTTCTTTGGTGAGGTGTCTGTAAAGGTCTTTGGCTCATTTTTTTGTCTTTTTTTTTTTTAAACATTGTTGAGTTTTAAGAGTTCTTTGAATATTTTGTTTGTTTTTTTCTGTATGATATCTGCTACAGTCTTTGTATATTTTTGATAACAGTTCCTTCTCAGATATGTTTTTTGCAAATATTTTCTCCCAGGCTGTGGCTTATCTTTCCATTCTGTTGACATTGTCTTTCAGAGGGCAGAAATTTTTAATGTTAATGAAGCTCAATTATTGATTCTTTGTTTTATGGATCATGCTTTAGCATTATTATCTAAAATATCATTGCCAGGGTGTGGGGGGCACGCGCTGGTAGTCCCAGTTACTTGGGAGGTGGAGGCTGGAGGATCACTTGAGTCCAGGAGTTTGAGGCTGCAGTGAGCTATGATCACACCACTACTACAGCCTGGGTGATAAAGTGAGACCCTGTCTCTTAAAAAAAAAATTAAAAATGTCAGGCCAGGCATGGTGGCTGACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGAATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGTAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGTGTGGTGGCAGGCACCTGTGGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCTGAGATTGTGGCACTGCACTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAGAAAAAAAATTTAAAATGTCATTGCCAAACAGAAGGTCATTTAGATTTTTCTCCTGTTATCTTCTAGGAGTTTTCTAGCTTTGCATTTTACAGTAAGGTCTGTGACCCATTTTGCGTTAACTTTTGTGAAGGGTCTAAGGCCTGTGTCTAGATTTATTTTTTTGCTTGTGGATGTCCAGTTGTTCCAGTACCAATTGTGGGAAAGACTTAGCTTTTCTCCATTGTATTGCCTTTGCTATTTTGTCAAGGTCAGCTGACTGTATTGGTGTGGCTCTGTTTCTGAACCCACTGTGCTTTTCTGTTGATCCATTTGAACATAAATTTTGAGGGGACGTTGTTCAGCCTAGTGACACAGGCAGTCATTTTAGATTGGTTGCTGACAGAAAGTGGATAGTATTGCTGGTTGCTGACAGTATTATTCAATAATACTCTATTATTGAGTATGTTGTGGGTGGCATAAAGTCTTTAGACAAAATTATGAGGTAACCTTGTTTTGTTTCATTTTATCATGATTTCAGAGTAACTTTATCCAAGATTAGTATTTTGTGAGATTATTTATATTCTATAGGAGAACAAAATGTCCCAGTTGTGACTGTCTGACCAGCTTGTAATGATATTGAGGTTTAGGTGTGAACATTAGATCAGTTCTGTATGTCAGAAGCTGCTTCCTCCTGCCACCTCTCCTTTTTTTTTTTTTTTGAGATAGAGTCTCGCTCTGTCGCCCGGGCGGGAGTGCAGTGGCACGATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGACTCCTGACTAGCTTGGATTACAGGTGTGCTCCACCACACCCTGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCATCATGTTGGCCAGGCTAGTCTCGAACCCCTGACCTCGTGATCTGCCTGCCTCAGTCTCCCAAAGTGCTGGGATTACAGGCGTGAGTCACCGCACCCAACCTGCCACCTCTCCTTTTTTTAAAAAAAAAAATAAATAAATTTGACATTTTGTTGCAGTTAAACTCACAGTTGTCCATTTTTGGAATATCAGAAGACTAAAGTTTTGTTTCTGTTTCATGGAAATGTTAGTGATTCTTCATTATTTTCCCTCGTGATATGCCTTTCTGCTTGTGCAG
Seq C2 exon
GGTATCCGCTACACACACCCCATCTGATCTCCCAGTGGGAACAAGAGGAGGACCTGCAGACAGTGAAGAGAGAACTTATCCAGGGCATCTTTATGGGAGAGCACCGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196110:ENST00000591998:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains