HsaINT0188264 @ hg38
Intron Retention
Gene
ENSG00000185252 | ZNF74
Description
zinc finger protein 74 [Source:HGNC Symbol;Acc:HGNC:13144]
Coordinates
chr22:20394161-20395418:+
Coord C1 exon
chr22:20394161-20394334
Coord A exon
chr22:20394335-20395332
Coord C2 exon
chr22:20395333-20395418
Length
998 bp
Sequences
Splice sites
5' ss Seq
CGGGTTCGC
5' ss Score
0.52
3' ss Seq
ACTCATTTCTCCTTCGCCAGCTC
3' ss Score
5.97
Exon sequences
Seq C1 exon
CCTGCTGCTCTTTGTGGCAGTCGCAGTCCTTTTGTGGGAGTCCGGTCTGTCCACTTGCCGGTCCCTCAGACCGTCGGCGGTCTCTGTCCGCTTCGGGACCTGTCCGCTGGTCGCTCCGCGTCCGATGGCTCCTGGCCGCGGAACCTTAGGCCTGGCCCTGGTCTCCGAGCGCGG
Seq A exon
GTTCGCCGGGAGGAGCGTGTGGCGGGGGTGTGCCGGGGCGTGAGTGCGCCGAGCATGGGGCTGAGCCTGGTGTGGGGAGTGGGTATCTGCGGAGCCGGCCTGAACCCCACCTCAGCCGGGCGCGGGGAGGGGGCTCCGTGCGTGTGATCGTGCAGCTGTGAGCGCGTGGCCGCCCCGCGGGGCTCCGCTGCAGGCCCCTCAGCCCCAGGAGCAGTACTCGCTCTTCAGGGCCTGCCCTGGATCCTGGAGGCTACACAGCTGCCCACTCCTCCTGGGGAGGCTGCCGTGGAGGCCATGGAGATCCCTGCCCCGGAGCCCGAGAAGACAGGTACAGCTTCACTCTTGTAGTCAGTATGTCTGTGGATTTGCACTTGAGGATATTGACACTCAGAGAGATCAGGCCAGTTTCCCAGAAGCATCCAGCATCTTTTTTTTTTTTTTTAAATGGAATCTCACTCTGTCACCCAGGCGGGAGTGGTGCAATGGCTTGATCTCCGCTCACTGCAACCTCTGCTTCCCGGGTTCAAACTATTCTCCCGCCTCAACCTCCCAAGTAGTTGGGATTGCAGGCGCGCGCCACCACGCCCGGCTAATGTTTGTATTTTTAGTAGAGACGGGGTTTTGCCATGTTTCCCAGGCTGGTCTTAAGCTCAAGCGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCATCGCTCCTGGCCTCCTGCTTCTTTCTTCCCCGCGCCCAATCATTTGTTCCCACTCAGACGTGCTTGATTGGGGGTAGCAGCTCTTTTCGTCATGAATTGGAGTGTCTGAGACACAGGCAGATTATTCCTCGATGCTGTTTCTGTTGGTGCTAGCTACTGGGGCTCGTTCCCCACCTGGCCTTGCTGGCAGGTTCTGCCTCCTCTCTGATTCTCACTTGTGCCACGACAGGTGGGCTTTAAGCTCAGCCGTGAGCCTGGTAGCCGTGACCTTGACTCATTTCTCCTTCGCCAG
Seq C2 exon
CTCTTTCCTCTCAGGATCCTGCTCTTTCCCTGAAAGAGAATCTCGAGGATATATCGGGTTGGGGTCTTCCCGAAGCCAGGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185252:ENST00000357502:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=NA C2=0.457
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTCTTTGTGGCAGTC
R:
CTTGGACCTGGCTTCGGGAAG
Band lengths:
259-1257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains