HsaINT0188288 @ hg38
Intron Retention
Gene
ENSG00000162086 | ZNF75A
Description
zinc finger protein 75a [Source:HGNC Symbol;Acc:HGNC:13146]
Coordinates
chr16:3312677-3313175:+
Coord C1 exon
chr16:3312677-3312768
Coord A exon
chr16:3312769-3313048
Coord C2 exon
chr16:3313049-3313175
Length
280 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AAGTCCATTCTCTTCTTTAGAGC
3' ss Score
5.94
Exon sequences
Seq C1 exon
CTGTGCCTACTCAACAGATTCTAGCTTTTCCTGAGCAAACAAACACCAAAGACTGGACAGTGACACCTGAGCACGTCTTGCCTGAGTCCCAG
Seq A exon
GTGAGCTGTGCTTTCCAGCTGTTGAGGGCTACCTTTCTCTGCTATGTATGATTAATACTGTCCAGGAGGGGTTCAGAGGTGTGTTAGTCCCGGGTGTTCTCTGGGCAACTGGGTACCTCCCAGGCTGTGGGCTGACGCCTTTTCTCCTTTTTTTCTGCCTTCTCACTTAAAAAAATCATGTTCTTTTAATTCCTTTATCGCCTGGCCAATTCATAGCCAGGTGGCTAGGCTGCTTCTGTACAGTGGCAGGTTCTGAGCTGAAGTCCATTCTCTTCTTTAG
Seq C2 exon
AGCTTGTTGACATTTGAAGAAGTGGCCATGTATTTTTCCCAGGAAGAATGGGAGTTATTGGATCCCACTCAGAAGGCCCTCTACAATGATGTAATGCAGGAAAACTATGAGACTGTCATCTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162086:ENST00000574298:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCTACTCAACAGATTCTAGC
R:
AGATGACAGTCTCATAGTTTTCCTGC
Band lengths:
212-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains