HsaINT0188541 @ hg38
Intron Retention
Gene
ENSG00000223547 | ZNF844
Description
zinc finger protein 844 [Source:HGNC Symbol;Acc:HGNC:25932]
Coordinates
chr19:12064699-12074157:+
Coord C1 exon
chr19:12064699-12064876
Coord A exon
chr19:12064877-12074030
Coord C2 exon
chr19:12074031-12074157
Length
9154 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
ATACATGTGGGATGTTTCAGGAC
3' ss Score
5.28
Exon sequences
Seq C1 exon
GTTTATCCGCGGGTCACATTGCCGTTCGCCTCAGTCTTTGGCCCCTCCCGCCGGGTGAGGTTGGCACCCCGTTTTTCCTGCTCTGAGAGGGACCGGTTGCCACCGCCATACTTCTGTCGCCCTGTCGTCTGTGTTGTGACTGCTTTGGACGTGGGAGTCACCTGAAAGCCAGGAAATG
Seq A exon
GTGAGTGTGAGCCCCCGCTGGGAGTCCCGAGACTTGGGGGAGGGTAGGCGGAGGCTGGTTGGAACTGGCTGGAACCGGCTGTGCCGGGACCCGGACCTCCCCGCGGCGACTCGAGGTCTGGGGCCCGAGCCCCGCTGGCGCAGCTCGGCCTTCGGTCCATTCGGCCGCCGGGTGCGGCTGGGCCGGCAGCCGGGACCCCTGGGCGCCCTGTCTCGTCGCCGCGCGGCGACTGCGGCCCCAGCCCGGGAGCCCTCTCTGGACAGCTCCGCGCCCGCAGCCCGGAGCCTCTCCATATTGTGCGGGGCCACGGGAGGGTCATGGGGGCAATCCCGCCTTGGGTGTGGGGCTCGTGCGGGAGGAGCTGCGCTGTGAGGCCCTCAGTGCCCCCTTTCTCCTGTTAAAACTTAAACAGGCCCGGTGCTGGGAATAGAGGCGTGAGCCACCGCGCCTGGCCTAGCGTGGAGAACTTGTGACAGCGGATAAATGTTTTCCCTGCTGTCTGTGGCTTAGAGCTTGGCAACTGCTGTCGTGTTTTTGTTCACATCATGATCAATGTGTACTAGATGCTTTGTTGTTGTAATCGCCTGAGGGGTTCTTCCTGCCTGTGCTGCAAAAAGAAAGACCAGGGCATTGCAGTAAAGAAAATGTTTGACACGAGATGGACCACGCAACGCCGAAGACGGAGACAGAGTTAGCACTCAAATCAGTCTCCCCGAAGGCTTATAGTTAGGGATTTTTCTTTAATATTTTTTTCTTACAATTTTTTTTTTTTTTTTTAAGACAGAGTCTCGCTCTTTTTTGCCCAGGCTGGAGTGCAATGACACGATCTGGGCTCAGTGCAACCTCTGCCTCCCGGATTCAAGCGATTCTTCTGCTCAGCTTCCCTAGTAGCTGGGGTTACAGGCACGCCACCACGCCCTGCTGATTTCTGTATTTTCAGTAAAGACGGGGTTTCACCGTGTTGGCCAAGGTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCCGCATCGGCCTCCTAAAGGGCTAGGATTACAGGCGTGAGCCACCTGGCCCGGCTAAAAATTGTTTTTTAAACAAGGTCTCACTCTGTCGCCCAGGTTGGAGTGCATGGCGCGATCACGGCTCACTGCATCCTGGACCCACCTGAGCAGCAGCTCAGGTGATTGTGCTGCCTCACCCTCCCGAGTAGCTGGGACTACAGGCGCAGGCGGCTAATTTTTGTATTTTTGGTAGAGATGGGGTTTCGCCATGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGCGATCTGCTCACCTCGGCCCCCCAAAGTGCTGGGTTTACAGGTGTGAGCCACCGAACTCGGCCAGGGGTTTTTCAAAGGCAGAATCGGGGAAGAGGTGGTGGGAAATGGTCCTCCTGAGTGCTGAGTTGCTTATAGAGGAGCAGGGTTGGTGGGCCTGAGTGGAGCCATGGGTGTCAGACAAGCAAAAAACCTGAAAACACTTATCTGCAGAAGTATCTTGGGACCAGTCTATACCATAGCAAAATTCAGGCTCCTCATCGCTCCCCACTCTGTTCCCCCCGCCCCGACTCATGGTTTTTCATTAGCTTTAGGAAGGCAGTGTTTAAGGAAGAGCTATTATCATTTAAACTATAACATAAATGTCTTCTTTTTTTTTTTTTTTTTTTTTTTTGTTGTTGTTGTTGACGGAGGCTCCCTCTGTCGCCCAGACTGGAGTGCAGTGACGCGATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGACTACAGGCGCCTGCCACCAAGCCCGGCTAATTTTTTGTGTTTTTAGTAGAGACGGGGTTTCAACGTGTTAGCCAGGATGGTCTGGATTTCCTGACCTCATGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCTCGCCCGGCCAAATGTCTTCTAAAGTTAGCTCAGCCTAAGCCTAGGAGTAATTAAGGCAGCTTGAAAGGTAAAGACAAGAGAAGCAGTTGGCTAGATCTCTTTGACTGCCATAATTTTTTCAGTGTTACAGTTTTTGCAAAAGTGGTTTCATTATCATGGAAATAGTAATAAAATAATATTGTCAACTTAAAAATAATGAGATTTCCATAAAAAATTAGCTGGGTGTGGTGGTACGCTCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGTGGAGTTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCTTGGGCTACAGAGTGAGACTCCCTCTCAAGTAAAATAATAATAATAATGAGATTTCCCTGGAGGCCAGTCAGTCAAGGCTGCACCGAACCGTGATCACACCACTGCACTCCAGTCTGGGTGACAGAGTGAGACCCTGTCTCAAAAATAAGAAAATTAGGCCGGGTGCAGTGGCTTACGCCTGTAATCCCAGCGCTTTGGGAGGCCGGGTCGGGCAATCACCTGAGAAGTTCGAGACCAGGCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATATAAAAATTAGCCAGGTGTGATGGTGGTGCATCTATAATCCCAGCTACTGGGGAGGCTGAGGCAGGGGAATTGCTTGCACCTGGGAGGCGGAGGTTGCAGTGAGCTGAGACCACGCCATTGCACTATAGCTTGGGCAACAAGAGTGAAACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCAGGAGATTGAGACCAGCCTGGCACACACAGTGGAACTCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGTGGGCACCTGTAGTCCCAGCTATCAGAGAGGCTGAGGCAGGAGACGTGAACCCAGGAGGTGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCCACAGAGCGAGACTCTGTCTCAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAGGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAAATTAAAAATTAATTTAAAAATAGCCAGGCATAGTGCCTCACACCTACATCCTAGCACTTTAGGAGGCCAAGGTGGGTGGGCGAGGGGTTGTGGGATCCTTTGAGCTCAGGAGTTTGAGACCAGTCTGGGTAACATGGTAGAACCTCATCTTAACAAACTGCTTAAAAAATAGCCAGGCATGATGGTATGTGTCTGTAGTACCCAGCCACTTGGGAGGCTGAAGTGGGAGGATGGCTTGAGCTGAGAGGTGGAGGCTGCAGTGAGGCATGATCATGCCACTGGACTTCAGCCTGGGCGACAGAGCAAGAAACTGTCTCAAAAAATAAAAATAGAGATTCAAAAAATATGGTTAAAGGCTGGGTGCGGTGGCTCACGCCTGTAAACCCAGCACCTTGGGAGGCTGAGGCGGGCAGATCATGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGTGAAACCCCGTCTCTATTAAAAAAATATATACAAAAATTAGCCGGGCATGGTGGTGGGCGCTTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAAACCAGAAGGCGGAGGTTGTAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAATAAAAAATAAAATAATTTAAAGTTCTAATGGCTTCAGGTTGGAATTATTGACTTCCACAAATGTGTGTATTGTCTGAAATGATTAGATACTTTTGCTTTCCATTTTGTGGTACGAAATGCAAATGCCTTATAATTTCCTTTCCATGTGTAAACCTGAACCTGAGTTTGAGGGATTTTGCTAGATTCTTCAAACACTGGGTATTTTCTCATTGAATCAGACCTGAGCCCAGTGACTGCAAGCTAAGGTCAATCAGAAGCCTGCAAAGAGGTCATTGAAGGCTCACTTGTTTCTTGCTGGGGAGCCTCTCCTGCAGTGTCCCAGCTGCTCACACTGACCCAGCTGCTCACACTGACCATGGGAGGAGCCCTTTATTCTGAGAGAATCTCAGAGCCCTGGAAAACTGAGGATCCACAGGCAGATGCAGCGGGTCAGCGATGCCTTTCTGAGGCTAGTTGTCCTAAGGTTGTTTCTAAACATTTTTAATGAAACAGATGTGGATTTAGGTAAGGAATGACTTTTCTTTTTATTCTTTTATTCCTTTTTTTTTTTTTTTTTTTTTGAGACCAAGTCTTGCTCTGTCACCCAGGCTGGAATGCAGTGGTGTGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCAGCACCATGCCCGGCTAATTTTTTGTATTGTTAGTAGAGATAGGGTTTCACCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGAATTAACAGGGGTGAGCCATCGCGCCCAGCCAGGAATGACTTTATTCTAAAGGAGAATTGAAATAAGGAAAAGGGAGAAAGTATAAGATCTGTAAGCATCTCAAAGTTAGCCCAAAAAGGAATTTTTTTTTTTTTTACAGAGAGGAGAAAACAAGGTTAGGAAGAAGGTGAGAGTGGGAGGTCAGGATACAATTTCATTCGTTAATAATTTGTATTTTAGGCCAGGTGCGGTGGCTCACACCTATAATCCTAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCAGGAATTTGATACTAGCCTGACCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCACGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGTAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCGGAGAGCCAAGTTTGCGCCAACTGCACTGTAGCCTGGACAACAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGAGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCTCGCAGGGAGGCAAGAGGCGGGAGGATAGCTTGAGCCCAGGAGTTCGAGACCTGCCTGGGCAATATAATGAGACCCCGTTCTCCACAAAAAGGAAAAAAAAAAAAAGACAAAAATAAAAATAAGCGTAAAAAAAAAAAAAAAAGAAACTGAAGCATGTGTGGTCATGCCACGCTGAACACATCTATTCTCTGTAGCTAAGCAGGGTTGGGCCTGGTTAGTAAATGTATAGAAAATGCCTAGGAATACTGGCTGTTTTATGCTTAAAAACAAAAAAAGAAAGGATTTCACAAGATAATTCACCAAATGGAAGAAAAACTTCTATATTGAATATCTGGTCCATCTTCTTCTTCACATAGGATGGGGGATGAATTGGTAGCCAGCACTCTGAGGCATCCTGGCCCATTACTGCAGGAGGTGAACTCTACCCTGTAGTCCTCTCTGGCAGTGGTGCAACCACAGTCTCCAATCTCATCCTGTTTATAGGGTGACAACAAGAAGTGGTCATCAGGAGAGAAATCTGACCTGGTGTTTTGGATGTTTGAGTAGGAGGTACTCCCAAGAAATCCATCTTCCTCCCCACCAGAAGAGAACTTCTTATCACTAATGCATTGCAGACATATGAATTAGGGTCTCAAGTCTAAGTCTTTATTCCTTGTAAAGAGAGATTACACTGAAAACTTGGTAAAAATTTCAAGGAAGGTTTTATTCAGCACAATTGCAATATGTGTTGAATAAAGCCTTATTTTTTGCCTATATGTTATAGGACAATTTAATATGGGAAAGAAATTGAACTCAACCTGAATGCATCAACAAGACAATTATATCTAAAGAGCAAGGTACCGTAGAGGATGGAACTTGGTGAGGTGTCAAGAGTTGGGGAAGAGAATATTAATAAATTATCATAGATGAGGGAAACAACTTGATTAGATATCAAGTTGGGGGGCATTCTCTCTAAACTCTCTTATTAGGATTTAGCTATAACTGGGCTCTGCAGGACAAACACAAAAGCTAGTCAGGAAGTGGGCTCCGAGGAGCCTCACTGAAGTATGATCAAGGAAGGAGTCCTTGAGATCCTCCCAGCCTAGTTCTTGCTAGGGCTGATGATAAATCCTTAAGTTTCTGGTTTCCTCCCCACGTTCCAGAACACTCCCTCATTTCCCCTTTCCACTGGACATCATTATCAATCATGTGTCCCCCATGATACATGTGAAACTGCTGCAGTATTTTAATTGCTTACCATTTTTTTCCACAAAGCAATAAGTGGTGGGTATATTCAACCCATTTTCCATGTGCCCCGAGAATACTCTTGTCTCTAATCCTAATGTAACATCATATACGTTTTTGTTATATTAGGATTAGAAACAAGTTCTGTTTAGAAATTTTATTTTCACATTGAAAGTCAATCAGATTTGCTTCAGCTTTAAAGAGTATGCTTGTGTAAAATTCAATGAATGCTGGCAGCAAGCTGCACTTTTTTTTCTAAATGGGAAATGGGTTAAAAATGTATTACTTTATGAATACTGTTCATGAGAGGAAAGCACTCAATAACCACTAAAAACTACATTATATAAATCCTTGTGCCTGATGACTCCTGGTCCACTGACGTTTTCATGAGCTTCTTGGCCCTTTTCATATATCTTGCAGGAATGTCATTCAGATACTTTCCCTATCTTTCAATCAATTAGGTTTTTTTTTTTTTTTTACTTGGTACAATAATTTATTATTGTAAAAAAATTAACATTTATTAGCTTTAGGAATTTTACATGTACTGTTGAGTTAGTTTGTCAAATCTATATAACTCGTCTAAGATGAATAATACTGTATTTTTGTGACTGGCCTTTTGCAATCAGTATAGAATCCTGAATTTTTTTTCTTTTTTTTTTTTTTGTTTGTTTGAGATGGAGTCTCACTCTCTCACACAGCCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCTGTTCTCTGCCTCAGCCTCCCAAGTAGCTGGGATTCCAGGCATCCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATCTAGGCCAGGCTGGTCTTGAACTCCTGACCTCGTGATCCACTCTGCCTCGGCCTCCCAAAGTGCTGGGATTACGGGCATGAGCCACTGCATCCAGCTGAATCCTGAATTTTCATGCTTTTTGTAGCATGGGACAGAAAGTTATTTTGTAAGACTAAATACTATCCCATTGTAAGTACATGCATACCACGTTTTCTTTATCCATTTAGCCATCAGTGGACATTTGGATTGATCCATCTCTTGGCTATTGTGAACAGTGGTTTTCAAATATTTCTTCAAAGATCCAACTTTCAATTTATATGAATTGAATATAAATAGACCCAGAAATGGGTTGCTGGAAGAAAATTTTTTTTTTTTTTGCTAGTTTTTCAGGCACCACCATACTGTTTTCCATAAAGATTGAGCCATTTTGCAATCCTTTGGTCAGAGCACATGGGTTCCAATTTCTCAACGTTTTTTCCAAACTTTATATTTGAGGTGGTTTGATTTTTCTTTTTTCTTTTTCTTTTTTTTTGAGATAAAGTCTCAGTGTTGTTGCCCAGGCTGAAGTGCAATGGCGCGATCTACGCTCACTGCAACCTCCGCCTCCCAGCTTCAAGCAATTCTCTGGCCCCAGCCTCCTGAGTAGCTAGGATTACAGGCACCCACCACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGACCAGGCTGGTCTTGAGCTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCTTGATTTTTCTTTTCTTTTTAGTTGAATGTAAGAATTCATTATATTTTCTGAATATTGAGACTTTTCCAGATATATGACTTTCCAATATTTGCTCCAGCATCATGGGGTGCCTTTTCCATCTGTTTATGGTGTCCCCTCATAGACAGAACTTTTAAATTTTGATAAATATTTGCCTTTTTGTTAAGAGTGGGTGCACTGGAGTTTTTATCCCTGAACTTTGTCTCCATTCAGCCTTCAGCATTTCATCAATTACAATTTAAGTTTTCCTACCACAGTCTGCTTTTTTTTTTTGAGACAGAGTTTCGCTTTTGTTGCCCAGGCTGGAGTGCAATGGTGCGATCTCAGCTCACCGCAACCTCCGCCTGCCAGGTTAAAGCAATTCTCCTGCCTCAGCCTCCCGAGTACCTGGGATTACAGGCATACACCACCACGCCCAGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGAGGCTGGTCTCGAACTCCTGATCTCAAGCGATCCGCACGCCTCAGCCTTCCAAAGTCCTGGGATTACAGGTGTGAGCCACCGCGCCCGGCCCACAGTACTGTTTTTCACAAAATTTCTATTCATGAGTTTTTTATTTAGATAGTTCTGCCTCTCTTATCAGTTGGGTTGGTTGAACCCCTTGCAAAATCCAGTTTTTTTTTTTTGCTTTTGTTGTCTGCTGCTTCAATCAGAATAAAATCCCCCTTCCAGGTAATCTTCAATGGTTAAACTTTGTGAACAGGCATTTTCAAGGATATATAGCCTCAGGACTGCTAATGTTAACATTTTCTGCAGGTGAATTTAGAGGACTGTGTTATGACAGGTGCTATAGACCCATGCTACAAACAGACATTAAGAGCAGCCCAGGCAGCGCACCTTTCTCCCTGGATTCCATGAAAAGACACATTTTTCTATTCTGCTGTTCGTTTATTGCTTAGTTCTGTTCCAGCATCAGAATTGCTTTAGAGAAGAAAGTAAGTGTAGACAGAGAGTAATGGGTCAGATGACCAAGAAATAGAATAAATGTTTGGAGTCCACAGCATCATGGGAACTTCTTAGGAAGAGGGTATAGACCCCCAGTGCTGTCAGTCTCACCCATCCTCCTCTATACATGTGGGATGTTTCAG
Seq C2 exon
GACTTGGTGGCTTTCGAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTGGTCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGAGAAGTGATGCAGGAAACCTTGAGGAATCTGGCCTCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000223547:ENST00000439326:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains