HsaINT0188563 @ hg19
Intron Retention
Gene
ENSG00000197385 | ZNF860
Description
zinc finger protein 860 [Source:HGNC Symbol;Acc:34513]
Coordinates
chr3:32023266-32033120:+
Coord C1 exon
chr3:32023266-32023394
Coord A exon
chr3:32023395-32030151
Coord C2 exon
chr3:32030152-32033120
Length
6757 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTCTCTCTCTCTATCATCAGTCA
3' ss Score
8.5
Exon sequences
Seq C1 exon
GCACACGATGCTGCGCCAGACGCTCCTACACAGTAACCTGGAAATTATCACCGGCGGAGCAAAGTCACAGCTCAGGGAGGCCCTCCGCGTTGTCTGGCGGAGGAGGGGAGTGGCAGGTGATCCTCACAG
Seq A exon
GTAAGCTCGCCGGGCATTTTCATGCAGCAGGATTATGATAAATGCTTAACAGACACACGGCTGGGCTGGGGTGAGGCGCGCGAACTCTCAGGTTTGTGCGAGTGCTTCCTTAAATTGAGTGTCCTAGGTCACTCACTGGCCTAACCCTAATCCCCTGCCCTGAATGGCACGCATAAACCTGGCAAGTCAAAACCTATCCATTGCTACCACACTGCACGTGCACCTAGGAGCAGAGGCTCTGAAACCGGGAAAACTGCTCCAGAGGCAAGGGAAATTAACAGATATTTACAAACATTGAAGGATTCTCTGTGTTGGCTGTAACTTCTGCGCCCCTCTTCCTACCTAAAGATACTCTTTCTATCCCACTAATATTTTTTGTGAATATAGATATCCATTGTAATCTGAAGTATCAAAAATTACCTAGAAAAAAGCTTTGAGGAACTCAGACTCTCTCTCTCACACACACACAGACAAAACAAAAGGTGATAGATGATAGGTGATCTCCGTCCAAAGGATCTACAAACCCATCAAGCAGATAAATACTTCAAGAGTTAAAAAAAATTACTAAATGGAAAAGTCAGCTCTCAAAGGGACAGTTCCCCGAGCCCAACCCCTTTCTAGCTTCACATCCTTCCAGGAAGATTTCATGGGTGGTTTAGCTCTAGAGATGCACGGAGAAGCTTCTGGAGTTGAAGAGAAGTGGTTGTGCCCCTGAGTAAATTACAATTCCAGGTGCCTACATAGTGTTAAAAAAAAAAAAATCTGAAAAGAGCTTGCCTGGACCAAATTTGAAGCCATTCAGAGCTGAATTCTAACCTATGACCTTGATCAAATTACCTCTTTTAGCCTTAGTTTTCTCACTGCAAAATGGGACAAATGATACCGGCTGTAATAAACTATGCAAGAATGTTCATTTGTTCAAAATATTTACTGCCGCTTCCTATGGAAAGAGTATCCTTCCTCCACATGGACCTTAGGCTTGGCCATGGAATTGCTTTGAGCAATGGAATGTGAACAGAAGTAATGAATGCCCCTTCCAAACATAAGCTTTAAGAGCAGTCATATGGTTCCACCATCTTTCTCTTTTCCTTATCCCAGGAGAGCAGCATGTCCCGGATAAGGACTCTCCTTAAGCTTGTGTCCTGGAGTGAGAAGGTGTGGAATACAGCAGATCCTAAGCCAGTTAGTGTTGGCCATGTAACATGCACAAAATGTTTGTTTGAAGCCATTGAGATTTTAGCATTATTTTTTACCACAGCATAGCTTTGCCTAAGCTAACTTACTGATCATATATGAGTGTTCATTGAGTCCTGCATTGACATACAGACTGAAGGTGGGAAGGTAGGTGCATACTGGACTATAAATGTCAGCATTATGTACCAAAACAACATGCCTTTTATTGGAGACTGCCACCTTAAGCTCCTGCTAAAAGAGGAGAAGTGTCATTTTATTTCATATTACCTAACCTATGCCACCATTACTCCACCTTATGCAGCCAACCTAAGACTGAATGAGCTAGCACAACAAATTCTCACCTTGGACTAAAAAATTAGACCCTTGAGATAGACCAGTTCAAGTGGGGAAGGAACTAAGCTAAAAGGAATAGTCAAGGCCAGGATGGGGCAGGAGCAAGCCAGCCGTATGGGATCAAAAATGTCCAAGAGGTGAGTGGAGCAGATGTGCTGAAAGTAGAGGCTATATCATGAAAGAGTGATGAAGCACATGCTGTTCCTCCTGCTGGTGACACTGTTCCCTGCTCTCTTCACCCGGTTTGTGTTTCTCACCCATGGAGTTATGGATTACAAGTCACTTCTTCCAGAAAGCTTTCCTTGACCTACCGTAGTATAGCAAATAGGGAAAAGGTACCTGCAGAATTATGTTTGGAGAGGAAAAAGTCTTTATGTTTGAAAAACAATTTGGAAAATACATAATAAGTTGGCAAAAAGTATTTGAAATACATACTGTAATGCCCAACAGTTTCATCTTGCTTGTTACCCGGAAAAGCCAATGCAGGTTTTTGCAATAGAGGAAGAGTTTAACAATTGTAGGGCCAGCCAAGCTGGAGCACAGGAGTGTATTATTACTCAAATCAATCTCCCTGAAAATTCAGAGCCTAAGGGGTTTTTTTTGTTTTTGTTTTTGTTTTTGTTTTGAGACTGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGTAGTGGCACGACCTCAGCTCACTGCAAGCCCTGCCTCCCGGGTTCACGTCATTCTCCTGCCTCACAGCTTCCCCAGTAGCTGGGACTACAGGCACCTGCCACCATGCCCAGCTAATTTTTTTGTATTTTTAGTAGAGATGGGATTTCACTGTGTTCACCAGGATGGTCTCGATCTCGTGACCTCGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTACCGGGCCCACCTAAGGTTTTTTTTTTTTTAAGGATAGTTTGGTGGGCAGAGGGCTAAGGATGGGGAAGCTGATAGATTGGGTGAGGGATGAAATTATAGAGAGTCGAAGTTTGTCTTCTTGCACTGAGTCAGTTCCTGAGTAAGGGCCACAGGACCTGATGAGCCAGTTTACCAGACTGGGTGGTGGCAACTGGTCCGTCAGAATGCAGGGTATGAAAAACACCTCAAACACAAATCTTAAGTTTTACAATAGTGGTGTTATCTATAGGAGTGATGGGGAGGTTAGAAATCTTGTGACCTCTGGAAAAATGGCAGATTATCATTTAACTATGCCTTTATCTTAGCAAAGTTCAGACCTCTCTTAAGCCTGTGGCCTTTCATTAGTTTTACAAAGGTAGTTTGGTGTTCAAACAAGGAGGGAATAGTTTTGGAAAGGGATATTACAATCCTTGCTTTAGGGTTAGACTATGAACTAAATTCCTCCCAAAGTTAGCTGTGGCCTGTGCCCGGGAATGAACAAGGACAGCTTACAGGTTAGAAGCAAGATGGAATCAGCTATGTCGAATTTTTTTTACTGTCATAATTTTGCAAAGGCACTTTCGGTATGATTAAAAATATTGGCTAGGCCAGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCGGGTCACGTGAGGTCAGGCGTTCAAGACCAGCCTGGCCAACATGGTACAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTCATACACGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAAAATCGCTTGAACCCAGAAGGCAGAGGTTGCAGTGAGCCAAGATCACACCATTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCATCTCAAAAAATGTTTTAAAAATACAAAATATTGGCTAAACACAAATGCTCAATATAAGGACCATTTCCTTAATTTACCCAGATTGCATAAATCACTTAGAAAAAATTTTAAACGTAAATAGAATGACTGGAAATCTGACAGCCATCACAGACCATGTAAAGATTTTGGGAATGAAGCTATGCATGATTGGAGCAATAAGATAAACACATTATACCTCTTGAAATAATGGACAGAATCAGTAGTTCCTAGTAGGGAGCTGACTACCCCATCTTCTTCTCCACATGGACCTGGAGGGCTGGTCTGGAGTTTCTAGTAGTTGTTTCTGAGGCTCCCTCCTCTAGTTAGAAAGCCTTAGGAGGATGTTCATGGACCAGCAAGTAAGTGAGTGGACATTGACTTCATTGGCCAGATGACAGGAATGAAGCTTGGCCACGAATAGAGAGAAAATTATCACAACCAGATCACTCTCTGATATCAACTTGGTCATGTCTGTGTTAGAAACATGTGGTCTGATGTGTTGTACGTCCCAAATAATAATAACAATAATAGCTAATGTATATTGAGCACTATGTGCTAGACTCTGCTTTAAGTGTTTTACACATAATAACTCATTAAATCCTCACAACAACCACATGAGGAGATCTACAGTTCTTACTCCCATTTTACAGGCAGAGGAAACTGAATTGAAGAGAGGTTCAGCAACATCCCCCAAATTCTGGTGGAGCCAGGATTTCAACTTAGGCAATTTGGCTACTGAGCGTGAGTTCTTAGCCACCGTATTATACCACTTGCTTTGCAATGAATCCAGTTTCATTTCCTCTACTTAATGAAACTGCAGAAAGCACAGCTCAGTGCCTGGAATTCCATTTCCTGTTATATTTTTATGCATTTAGGAATTGATCCTCTCATTACCACTCTGAGAGAAGCAGTACAGGTGTTTGGGCCTCTAGCACCCAGCCACAGGGCCTGAACACAATCATACTCAATACATGTTTATTGCATGATAAATGAAGCCTAATTTTACTGAGGAAGAAACAGAAACTCAAAGAGGAGGAGTTGATTCTGAACCAAGGCCTTCTGACTCCAAGTCCAGTGTTCTTGCTGCCTGAACTTCAGCTGTGACGTGTACATGCAACCTTACCATCCAGTGGGAAGAAGAAAATACCAGAATTAAGGTATGGACAGTCCACTATCCAGTGAATAAACAGCTCCATTAAGATTACCCTGAGAGGGCCAGGCGCGGTGGCTCACGCCTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCTGTCTCTACTAAAAATACAAAAAAAAGTTTATATTTTTTTATACGAAAAAATACAAATATACAAATAAAATAGGCGCCTGGCCTATTTATTATTATTTTATTAAATAGATGCTCACTTTCAAAGATTTGCACACAAAATTATAAAGTAAAAACTGAAGACCAGGTGCAGTAGCTCATGCATATAATCCCAGCACTGTGGGAGGCTGAGATGGGAGGATTGCCCAGGAGTTCCAGACCAGCCTGGGCAACCTGGAGAGACTCCATCTCCAAAAAAATTTTTAAAATAAGCCAGCCACAGTGGCACATGTACCTGTAGTCCCAGCTACTCAGGAGGCTGAGCCAGGAGGATTGCTTGCGCCCAGAAATTTGAGGCTGCAGTGAGCTATGATTGTGCCACTGTACTCCAGCCTGAGTGACAGAGCAAGACCCTATCTCAAAAAAAACAGAAACTAAAAAATTATTTCTAAACCACTGCTAATAATTTATAAATATATATGTGTATATATACTTTTATATATGTATGTCCATATATATGTATGTGTATACACACACACACACACACATATATATACATCTCCTTCCCTTCGTCCAGACACTCTTCTATCTGCATAGTTGTATATCATTTTATTCAAAAACAGGTTCATACTATAAAACATATAATACTTTCTAATTTACCTTGTTCACTGAAGAATATAGTATAGACAATTTCCTTTAGAGCTATATTATCCTTTGTAACAGTTTCAGAGTATTCCACTGTCTATATGCACCCTAATTTAATCATTCCACTACTGATGAACACTCATATTTCAAGCTTTTGCTATTGTGAGAAATGTTCTTTAAATAACCTTTTACATTAGTTTAATTATTTCCTTAGAATAAGATCCAATGACTGGGTCAGGCTGCATACACTTATAAATGTGGCTCATGTACTACAGAATTAACCCCCGGAAAGTCTGAACCAATGTTTACTATGCTGGTTCTGGCTAGATCTAACATGTCAGACCATTGGCTGGATGGACTAGGCTGGCCATGTTTGAGCTGGGCTCTCTAATCCACAGGGTCTCTCATCCTCTAGCAGGCCAGCCCAGGCTTGTTTTCATGGCATGGGGAGGGTTCCAAAGAGAGGAAGCCGGAAGGACCTCCTGAAGCCTAGTCTGGGAACTGGTATAATGTCACTTTGCCACATTTCAACTAACAGTGCTAGAAGACTGGGACATTTATAAGCAAAAAATTGAAAGACCTATACTTCACACTTTATGCAAAAGTCACCTCCAAGTGGATCAGAAACCAAAATGTGAAATGTAAAACCATTAGATTTTCAGGGGAAAACATAGGAAAAAATACTTATGAACTTGGGTTAGGAAAATGGAGCAAACACATATTGCCTTTTGTGATAAGGGAAGGATGATTAAGAGGGCAAAACCAAGGGTTCAGACAGGGAAGCCAAGAACCCCAGAGAAGTATTCCCAGGCCTTGAGACCTAATCACGGAAATTGCAACATTTGCCCAACTGGCTTTCAAAATTGCCTTGGACCACTGATCGCTTTGCACCTCCTGTTTCCGCCTCTTTGAACAAGAATATCTGGAGCAATTATCCTGTGTCTGCTTCACCATTGTGTTTTGAGTGTGAAGGGGCAGATAACCAGTCTCTTTAGTTTCACAGATCAGAGGAACGGCACTTACGGAGCTAAACTTACTAACCTGAGGAGCCTCTCCTACCTAGACCTGACTTAGATGGTGAGATTGTGGACTTGAAGCTAGTGCAGTAATGGGATGAGACACTGGGGGCCACTGAGGAGTAGGATGAGTGTGTTGTACATGTGGGAGGAATATAAAAAAATTTGTGGCCAGAGGGTAGACTGTAGTGATTTCAAAGCTATGCCTATAGATTCCTCTCCTTTAGAGGTGAAACTTAATTCCTCCCCTCTTGAGTGTGGGATGAATTTAGTGACTCACTTCTAATGAATACAATATGGCAGAAGTCATGGTATATCATGTCCAAGATCAGCTTATAAACAGGGGAGTGTTCACTCTCGCTCTCTCTCTCTCTTTCTCTCTCCCCCTGTCTTTCTCTCTCTCTATCATCAG
Seq C2 exon
TCACTCTAGGAAAGCCAGCTGCCATGACATAAGGATACTCAGGCCACCAATGGATAGCCCAGGCAGGAGGCATGAAGGTGTGCCAGCCACTGTGTCAGTCACCTTATAAGCAGATTTTCTGAGACCTGCTAACAGCCATGTGAGTGACCTTGGAAGTAGGTTGTCACCAGTCAAGCCTTGAGATGACTGCAGCCATGACCCACAGCTTGACTACAACCCAGAGAGACACTGAGCCAGGAACACCCAGCTGAAGTGCCTCCAAACCCCGACCCACAGCGACTGTGAGATAATCAGTGTTTGTTGCCTTAAGCCACGAAGTTTGTGATAATTTGTTTCTCGGAAACAGATAACTAATACAGAGCAGGAAGCAGATCGCCTCAGTGAAGGTCACACTGCAGCACTATTGATTTCTAAAGACTCATGTTACGTGAGGAAGCAGCTCAGAAGAGGAAAGAAAAGGAGCCAGGCATGGCTCTTCCTCAGGGACACTTGACTTTTAGGGATGTGGCTATAGAATTCTCTTTGGAGGAGTGGAAATGCCTGGACCCTACGCAGAGGGCTTTATACAGGGCCATGATGTTGGAGAACTACAGGAACCTGCATTCTGTGGATATCTCTTCCAAATGCATGATGAAGAAGTTCTCATCAACAGCGCAAGGCAATACAGAAGTGGACACAGGGACATTAGAAAGACATGAAAGTCATCACATTGGAGATTTTTGCTTCCAGAAAATTGGGAAAGATATTCATGACTTTGAGTTTCAATGGCAAGAAGACAAAAGAAATAGCCATGAAGCAACTATGACACAAATCAAAAAGTTGACTGGTAGCACCGACAGATATGATCGAAGGCATCCTGGAAACAAGCCTATCAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCTTCCTGAACTCCACATATTTCAGACCAAAGGGAAAGTTGGTAATCAAGTTGAGAAGTCTATCAACGATGCTTCCTCAGTTCTAACGTCCCAAAGAATTTCTTCTAGGCCCAAAATCCATATTTCTAATAACTATGAAAATAATTTCTTCCATTCATCATTACTCACACTAAAACAGGAAGTACACATAAGAGAAAAATCTTTCCAATGTAATGAGAGTGGCAAAGCCTTTAATTGTAGCTCACTCTTAAGGAAACATCAGATAATCTATTTAGGAGGGAAACAATATAAATGTGATGTATGTGGCAAGGTCTTTAATCAGAAGCGATACCTTGCATGCCATCATAGATGTCACACTGGTGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCTTGCAAGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTTAGTCGCAAATCAAATCTTGAAAGACATAGGAGAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGAAAAGGCTTTCAGGCGTGATTCACACCTCACACAACACACTAGAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAGCCTTTAGTGGGCAGTCAACACTTATTCACCATCAAGCAATCCATGGTATAGGGAAACTTTATAAATGTAATGATTGTCACAAAGTCTTCAGTAATGCTACAACCATTGCAAATCATTGGAGAATCCATAATGAAGAGAGATCTTACAAGTGTAATAAATGTGGCAAATTTTTTAGACGTCGTTCATATCTCGTAGTTCATTGGCGAACTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCCATCACAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCCGTCACAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAAGCAACCCTTGCACGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACACAGTTTTCAGTCGCAAATCACACCATGAAACACATAAGAGAATTCATACTGGAGAGAAACCTTACAAATGTGATGATTTTGACGAGGCCTTCAGTCAAGCTTCATCTTATGCAAAACAAAGGAGAATTCATATGGGAGAGAAACATCACAAGTGTGATGATTGTGGCAAAGCCTTTACTTCACATTCACATCGCATTAGACATCAGAGAATCCATACCGGACAGAAATCTTACAAATGTCATAAGCGTGGCAAGGTCTTCAGTTAGAGGTCACTCCTTGCAAAACATCAGAAAATTCATTCCTGAGATAATTGTTCCAAATGCAATGAGTATAGCAAACCATCAAGCATTAATTGACATTAGAGTCAATTCAGCATTGACTTGAGTTTCAGTTGACTTGACATTGAGTTCAAGCATTAATTGACATTAAAGTGTTTACGTTAAGAGGATTGGGCTGGGCAGGGTGGCTTATACCTGTAATCCCAGCACTGTGGGAGGTCAAGACGGATAGATCACTTGAGGTCAGGAGTTTGAGACCATCCTGGCCAAAAGACGTGAGCCACTTTTCCTAGCCTGTTTTTTGTTTCTGATAGGGATTTTTATGGGTATTGTGTTGAATCTAAATCACATTGGGTTATATAATCATTTAACAATATTAATCTTTCCAATCCATCAATATGGGTCATATCTCTATTTATATAAGTTTTTAATCATTTTGATCAATGTTTGTAGATTTCAAGGTACAAACTTCTCACCTTTTTACGTTTATTCCTAAATATTTCTTACTGTAAGTTCTCTAGCAAATGGAAGTGTTTTCTTAATTTTCTTTTAACATTGTTTATTGTTAATGTATGGAAATTTAACTAATTTTTGGTACTGATATTGTATTCTGCAAATACACTGTGTTTATTAGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197385-ZNF860:NM_001137674:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF0009621=zf-C2H2=WD(100=3.6),PF0013017=C1_1=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)