HsaINT0188796 @ hg19
Intron Retention
Gene
ENSG00000158691 | ZSCAN12
Description
zinc finger and SCAN domain containing 12 [Source:HGNC Symbol;Acc:13172]
Coordinates
chr6:28346598-28350386:-
Coord C1 exon
chr6:28349968-28350386
Coord A exon
chr6:28348649-28349967
Coord C2 exon
chr6:28346598-28348648
Length
1319 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
GTCTGTGCATTTTGTTTTAGATG
3' ss Score
10.3
Exon sequences
Seq C1 exon
GAAGAAGACCAGCTACAAGGAAATACTTCTGAAAAATCACTCTGAACCCCAAGCTGGAGTGAATCTTCTCCTGAGCTCTCTCATTCCAGAATGGCAATCTTGTTTCAGGAGAGATCTCTAATAGTGACTGATGGTAAAGGAAGAAGGCTGTGCCTAGAACAAAGAATCAGGCTGGCAAAGAAATCACAGGTCTTTCCTCAAACTTTAAATTGCTACTCTCTGGAGATAGCTACCTGGACTTTACAGAGCTGTCAGAAGACTTGGGAAGGTTTGCCAGCATTGGAAAAAGCCACTTGGACTTCACAGAGCTGTCAGAAGACTTAGGAAGCTTTGCCAGTAGTTCCTGAGACCAGAAATACATATTATGAAGCAGGTGCTGGAACAGGCCCTGGCCCCTACTTGTGAAGCTGCAGATATAG
Seq A exon
GTAAGATAATATCATCCAGAATGTGGAGACGAGGCAATCGATGATGCTGGAAAAGTTGAAGAGAGAGTTTGAATGAAGGACAAACCACCGATGGGAAAGCTTGGGAGGATCACTTATAGCTTGACTAGCAAAAGGCTTTGGGAATAGGATAGAAAGCAGCAAACCTGAACTTTAGGATCCACCAGATGTCTCTGGAGCCATAACCCAACATTTCCCATAAATAGTAGGTTTTAATTCTCCTGTTATTTAGGTGCATCTCTGGGACCTCCTCTTTCTATATTGGGTTTTTTGTTTGTTGGGTGTTTTAACTTAGGATTTAGCTTCAAATTCCATTTCCCAAGACCAATTTTATCACATTGCCTTTAGGTCTCAGGCTAAATGATATAACAAGATATGCTTTTGGCAAAGATAGTACCTTGGAATGAAAGGTTTCAGATCAAACCTAAGATCCTACCTTAGTTTACCTCTCAGTGTTATTGCCTTTTGATATGGAAAGCTGATGAGAGAGCATCTCTGGAGAGAAAGAAGAGGAGAGCCTCACGGGAAGCTTTTAGAACTTTTAGTAGCATCCTCTCCCCAGAAAACTTGTCTCTACTCATCTCCTTCTCATTATCTACCTGATTCGTTAAGTAGGAAATCTCAGCCATATTTGTAGGGGATTGGGGTTTTGTTTTTTTTGACCCACTTAACTCCTTTAGCTTCAGAGTGTTGCTTTCTTACATTTTAGACATGAATATTACCTAGAAAATTTATTTCCCCACTGTTAATTTTCCAGTTTATTGATTTCCCCACATCAGATTAGTGTGTATTTTGAAACTGGTTTAGCTATTGTTTCAAGTTAACTTTGATCATATCCCGTTGTTTACTGATCCACTCAACAAATATTTATTGAACATTCTGTAGGTTTATAGTAGTAGCCAAGATACTTAAAGTGAGTAGAAATAGTCCTTTTAACTGTCCTTAACAAATTAAACTTTCTCTTGGTTTCATGATATTCCTTGTTTCTCAGCTTTGGATTCAAACTGATCTTCTCTTTTTTGATTATACTTTCCTGATTTCTTTTATTGTCACATTTTTGTGAAAAGTCTTCCATGCACTTCCAGTCTCTTTCTGCCTAGCTGTCTCTTCTCACCCAAATTGGACCCCCCTACTCCTACCCTGCCACGTGCCTTCACAAAAATGAGATGCTTGTTTAGAGACTTAGAAAAGGCATGCACTTTAGGTAAAAGTGGATTTTATTTTTAATCACTGTACCCTATCATAAATCTCATTTCAGAAGAGACAACTGACATTTGAATTGTCTGTGCATTTTGTTTTAG
Seq C2 exon
ATGGTGTTACTGAGAAGGAAACTAAGGACTTGGCTCCAAAACAAAACAAAACAAAATCTGGAGATGCTGAATTTTGTTGGGGGGAATGTCTGTAGAACTGCAACATCAATGCAGTAAGTGTAGTAAAAGCTTTAGTTTATGGTGAGTCATTACTCAGCATCATGGAGTCCACGATGAAGAGAATCTCTTTTCAATCTGTGCAATCAACAAGTTTTTGAAAGGCTTTTGTTTATAGTGGAACCCTCTTTTCCCCCTAGAAGAACCACCACAAGGAAAAATGCTGTCACCATAAGGAATGTGGGAAAGTTTTCAGCCACATGGCCTTATTTGACTTCAAAGAATCCACATGAGAGAGAGACTGCATAAATGTAATAACTGAGGAGGCCTTTGTTCAGCAAAGAAACCTTATACAAACTCGTATAAAGAATGTAGGAAGACCTTCACCCAGAAGCCAGGACTGACTGTGCACCAGAGAATCTGCACAATAAACATGATGAATGTGGAGATGCTTGCTTCAGCATTGGAGAATTCACAGTAAAGGGAAACCCTGCCAGTGTGATGAGTACGGAAAAGTCTTCAGAGGTTGGAACTTGGGAAAAATCAGTGAGTGAATTCATATTAGAGAGGCTCTTATAAATGAGAGGATTGTGGAAACTTGTATAGACAGAGATCAGACCTCAACAAGGGAGCCTCCACAGTATTGAAAAGTTAATATAATTAATGTAAGTGGGCAAGTTGTATGGGGAATGGGTAGTCTAAATTGCTCATTTTAGCCAGTAAAAACATTAAATTAGTTTCTTAGATCAAGAAAAGGAAATGTTAGAAGTTATTTTTCCCTTCCAGAGGGGTCTATATGTGTAAGCAACCAGGACTTTTGAAATAAGTTGCATCTCTGGATTTGTGATCTGTCTCCTGGATGATTATCTCTGTTTTGGGAGACAGGTATTTTTTCTTCATGCCTGCTCTAGTCTCATCTCATATCTTTAATTCATTCAGCAAGTATACACAATAGTATTATCGTCTACTGTTTGTTGTAAATATATATATATTATTTTCTTTTTGGTCTGAGTAGGCTTGTATTGGTACCCTAGGACATAAAAATCACATATATCATGTTTCAGTAAATGCAGTGAAAGGAACTATATTATTAAATTGCTGGGAATTTCTGTAAATTTGAGACTACCTTTATATTCTCCAACACAAGACCGTGTAGGTGTCCCTTCAGAGAGTATATTTTTCTAGCTTGGCTTCTTTATTTTCTTTATTTTTTTGAGATGGAGTCTTGCTCCTGTCGCCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGTCTCAGTCTCCCGAGTAGCTGGGATTACAGGCACTTGCCACCATTCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTTGTGATCTGCCCACCTTGGCCTCCCAAAGTTCAGGGATTACAGGCATGAGCCACCATGCCCGGCTGTTTTTTTAAGATAGAAAAATATACTTCATGTATAGCCTATTGACAGATAATGACTGATATTTTTTCTTATAGATAACACATAATAAACATTGTGAAGACTAATAAGTAACTTGCTTATTCTTTTCAGTTCTAAAACCTGTAGGAAAGAATCTTTAGAAGCTGTCAACAAGTTGATAATGTAGCCCAATCTCTACCCATGATAGGAGAGTAAGGCTTATATATTTTATAGTAGGGCACTAAATACAGGAACCATGTATTTAAAAACTTTTTAGTGATTATCTCAGAATTCTAGGTGTCCCTCTGCTGTACATCCCTAAATTTTTTGCATAGGTATTATTAATAAATTCATTATTTTCAAAGATGGACTGTGTTCTGTAAAAAGCTTTTCCAGTATCTGCAAATCACACAGTTTTTTTTAACTCTATTACTATTATATAAAATGATTTCTTAATATTGAACCAACCTTGCATTCCTAGAATAAACCTCACTTAGCCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158691-ZSCAN12:NR_028077:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGTAGTTCCTGAGACCA
R:
TGTGGTGGTTCTTCTAGGGGG
Band lengths:
358-1677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)