HsaINT0188799 @ hg38
Intron Retention
Gene
ENSG00000196812 | ZSCAN16
Description
zinc finger and SCAN domain containing 16 [Source:HGNC Symbol;Acc:HGNC:20813]
Coordinates
chr6:28125413-28126921:+
Coord C1 exon
chr6:28125413-28125830
Coord A exon
chr6:28125831-28126782
Coord C2 exon
chr6:28126783-28126921
Length
952 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
ACACACCTCATTTTCCCTAGGTC
3' ss Score
9.34
Exon sequences
Seq C1 exon
ATAGAGGATAAATCTCCTGGCAAAGCCCAGAATGACCACAGCCCTGGAACCTGAGGACCAAAAAGGACTTCTGATAATTAAGGCAGAGGACCATTACTGGGGACAGGATTCCAGCTCACAAAAGTGCAGTCCTCACAGGAGGGAACTCTATAGACAACACTTCAGGAAGCTCTGCTATCAGGATGCACCTGGACCCCGTGAAGCTCTTACCCAGCTGTGGGAGCTCTGCCGTCAGTGGCTGAGGCCAGAATGCCACACCAAGGAGCAGATTTTAGACCTGCTGGTGCTAGAACAGTTCCTGAGCATTCTTCCTAAAGACCTGCAAGCATGGGTGCGTGCACACCATCCAGAGACTGGAGAGGAGGCAGTGACGGTACTGGAGGATCTGGAGAGAGAGCTTGATGAACCTGGAAAGCAG
Seq A exon
GTGTGAAGGGGCAGTCATCTGGCTGTGAGTGATCAGGGGATATGGATGGAGCCAAAGCAAAAGGCATATGAAAGAACATCTGAAAATATTTATCCTCTAAAGAACAAGGCATAGGAAGGGACCTGACTACCTATGTCAAATAATTAAAGTGTGGCTGGGTAAAGAGAGGAGAGTCACTAGACTGATTCTATGCCTGTTTGGAAGGCTAGGATCAGTGGGAAGTTACCAAAAGGCAATCAGGTATCAGAGGAAAAGAAATAATTTTCTGCCATTCATAGATACCCATAAATAAAATAGGCTACCCCATAAGAAACTCCCTTTCCATATAGGTATTCAAGCGGAGATTCAAGTAGATGTCAAGGATATTGCAGAATAGGACTGTCCAACAGAAATATAATGCAAGCTGTATATGTATTTAAATTTTCTAGTAGCCACATTAAAAAAAAAGGTGAAATATATATTTTATTTAGCCCACAATATTTAATCATGTAATCAATATTTTTAATGAGGTATTTTAGATATCTGTGCTTTAAATTTTCAAAATTTGGTATGTATCTTACATTTAGCTTATCTCATTTGTACTAGCCATATTTTAAGTACTCAGTAACCACATTTTGCTAGTGACTACCATATCGGATAGCATGGTTATAGAAGAAATGCTCCCATTTGCTGGAAGTTGGGCTAGATGATTTTTAAGCTACCTTCCAAATCCCAGTGCTCTGATCCTGGACTTCTGCAGATCAATGAAAGAAGAGACGTTGAATTTTACTCTCTAGTGTCCTGAATTGTAGAGATTAGCCTCTGTTCCTTCTCCTAGCCATTATTGCCATTTACAATGAAATGAGAATTTGTCCCCCCTTTCTATGTCCCTGGAAGATGTTTCATTTGATTGTTTTATCTGAAGTTACTTAAGTTTCCATAAAATTCACCTTACACACCTCATTTTCCCTAG
Seq C2 exon
GTCCCAGGCAATTCAGAAAGACGGGACATACTCATGGACAAGTTGGCCCCCTTGGGAAGGCCATATGAATCACTGACTGTCCAGCTCCATCCCAAAAAGACCCAGCTGGAGCAGGAAGCTGGGAAACCACAAAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196812:ENST00000340487:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.809
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=72.9)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAAGCTCTTACCCAGCTG
R:
TTGTGGTTTCCCAGCTTCCTG
Band lengths:
354-1306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains