HsaINT1002680 @ hg38
Intron Retention
Gene
ENSG00000183549 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr16:20421258-20424069:+
Coord C1 exon
chr16:20421258-20421401
Coord A exon
chr16:20421402-20423915
Coord C2 exon
chr16:20423916-20424069
Length
2514 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
CGTTCTCTAATTTTTGGCAGACG
3' ss Score
6.7
Exon sequences
Seq C1 exon
GGAGGCTTCTACAGAGCACAACTGCATGAGGACAAAGAGTCGAGACCCGCTGGCCATCTACTTTACCAGCGGAACCACCGGGGCCCCCAAGATGGTCGAGCACTCCCAGAGCAGCTACGGACTGGGTTTTGTGGCCAGCGGAAG
Seq A exon
GTACCAGAGCAGCTTGTCTAGAGGATCCAAGAACAGAAAGTGGGGAGTGGTCTGGAGGGGGTGGTGTGAGGGGAAAGGTGTCAGGAACGGAGGTCAGAGAGCCAACAGAATTACTGAGAAGCCAATAGGAGCAGCTTAGGAAGGATCTTGATGGTTCTGGATTTTACTCTGAGTGAGGTGAAAAGCCATGGGAGGTTTCTTTTTAAATCGTGGCTATATATATATATATATATATATATATATATATATATATATACACACACACATATATATACATACATACACATATAAACATATATATACATATATCATAAATGTACCCTTTTAACCATTTTAAGTGTACAGTTTAATGTCATTAAATACATTCACATTGTTGTGCAACCACAATCACCATCCATTTCCAGAATTTACTTTATCTTTCCAAATGAGAACTGTGCCCCCATTACCCAATAACACCCCATTACCCTCTCCCCTCACCCCTGGTAACCTCTATTTTACTTTTCATCTCTGTGAATTTGATACTCTAGGTATTTCGTGTAACTGGCATCATGCAGTCTGTCCTTTTGTTTTGCAATTTGGCTTCTTTCACTTAGCATAATGTCCTCAAGGTTCATCCGTGTCATAGCATGTGTCAAAATTTCCTTCCCTTTTAAGACTGAAAAATATTCCATTGTATGGATAGACCACATTTTATTTATTTTTATTTTTTATTTTATTTTTATTTTTTTGAGACAGAGTTTTGCTCTTTTGCCCAGGCTGGTGTGCAGTGGTGCGATCTCCACTCACTGCAACCTCTGCCTTCCAGTTTCAAGCAATTCTCCTGCCTCAGCCTCCCAGATAGCTGGGGTTACAGGTGCCCGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACCGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGATCCTCACGCCTTGGCCTCTCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCTGGCCTCGACCACATTTTAAATAATCCATTCACCTGTTGATAGACACTTGGGTAGCTTCCACATTTTGGCTATTGTCAATAATGTTGCTATAAACACTGGCATGTGAGTATCTGTTAGAGTCTCTGCTTTTACTTCTTTTGGATATACATGCAGAAATGAAATTGCTGGATCATATGGTAATTCTATGTTTAATTTTTTTTGAGAAGCATTGGGTATTTTGAGCAGAGGAGTGACATAATCTAATATGTTTTTTAAAGGCTCACTCAGGATGTTGGGTTGACAATGTAACTGTAGGGGAAACAGGTAAAGAAGATGACCAGTGCATTAAGAGGCAAGCATGGTAGCTTGCCCGGGGAGCAGTAGTGGGAGAAGAGATGAGATTCTGAATGTATTTTCAACCTAGACCCAATAAGGCTTGCTGACAGAATCAGTGTGGAATGAGAAGGAGGAGTCAAGGAGAGCTCTAAGAGGAATGGCCTGAACAACTGGAAGCACTAAATGATGGGGGAAGAACTGTGGGATGAGCTGTCTGGTGGCAAGAAAACAGTTTGTTTATGGAGTTGTCAATTTGAGAGTCTTCTTAGAAATCTCCATCTCCTTGTTAAAAGTGGAGATGTTGAGTGGGCATTTGGATACACATGTCTGAAGTTAATGAGAAAGATTCATGCTGAACTTATCAGTGTAAAGATGGTATTTCATACCATGAGATGGGATGAGATCAGCAAAGTGTAATATAAACTGAAAAGAGAATGGGTCTCAGGACTGAGTGCCCGAGGCATTTCTGCACTGAAGGGGAAGACCAGGAGGACTCAGCAGAGGAGACTGAGAAGGGAACAGCCAATGAAATGGGGAGAACCAGGAGTGCGCGTGTCCCAGGATTCAAGTGCATGACCGCTTTTTATGTCTTCCATGTTTGCAGACACTGTTTCCCATTCCTGGGATGCTCCTGCTTCTCTGCCTCACCTATATAATCCCTATTTATTCTTTATGTCTAACTCAAGTGTCACTTCCTCTACCAGAGCATTTCTCAGAAACCCATGTCCATCATTGCTCTGGGTTAGGTGCCTATTCTCTATAATTGCACAAGGCTTTGTGTTTAGCTCTATTAAAACATGCTCTCCAGGGGCTTCCTATAAGGCCCTCAAAGCAAGACTAATCGTTCATTTCTAGATCCCTAGTGCTAAGTCCAGACTAAATGCTAAATAAATGTTGGCTAAATAAAGTGACCTTAGCACAGAGTATTGAGGTTAATTTTTTCCCCTTATATATCACATCCACTGGACTGTGAACTTTCTGGAAACTCTTTTTGCTTCTGTATTCTTAGCCTAGGGCATAGGTACATGGAAGATGCTGGTTGAGACAATAGTTGACTTGATGGTCTTGTTCAGGTTTCACAAGTATAAGTGAGTACCCACTGAGCAGGGCTCCAAATGTGGTGATATAGATAATACAATCCTTTTTAAAGGTAGAGTCATTGCCAAGGTTACTGACGTTCTCTAATTTTTGGCAG
Seq C2 exon
ACGGTGGGTGGCCTTGACCGAATCTGACATCTTCTGGAACACGACTGACACTGGCTGGGTGAAGGCAGCCTGGACTCTCTTCTCTGCCTGGCCTAATGGATCTTGCATTTTTGTGCATGAGCTGCCCCGAGTTGATGCCAAAGTTATCCTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183549:ENST00000331849:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains