HsaINT1002687 @ hg38
Intron Retention
Gene
ENSG00000173124 | ACSM6
Description
acyl-CoA synthetase medium-chain family member 6 [Source:HGNC Symbol;Acc:HGNC:31665]
Coordinates
chr10:95210650-95212034:+
Coord C1 exon
chr10:95210650-95210793
Coord A exon
chr10:95210794-95211877
Coord C2 exon
chr10:95211878-95212034
Length
1084 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
GCTTTCCTCTTTCTCTTTAGACG
3' ss Score
9.84
Exon sequences
Seq C1 exon
AGTTGCCCCTCCAAAGCAGACCTACATGAGGACCAAAAGCCAAGATCCAATGGCCATATTCTTCACCAAGGGTACAACAGGAGCTCCCAAAATGGTCGAGTATTCCCAGTATGGTTTGGGAATGGGATTCAGCCAGGCTTCCAG
Seq A exon
GTACGGTTCTCGCACAGCCTGTACAGGCCTGAAAGTTGTTCTCTTGCAGGTAAAGGGAGCTTCATGGGACTAAAGCTAAGAAAGGAGTTTCTTACTCAAGACTGCAGAAAGTGTCAATATTGAGAGAAGGAACAGGGCTGAGGGCCCCAAAAGATGAAAAGCAAATTACTATAGTTCAAAATTCTAAGAGTAAGCAGGAGGGAAAAGAGGAAGAGCAGGGATTCCATGCAGTAGGTGAGGGATCCAGGATGATCACCCCAAAGACACACTGTGGGATGTTACTTGTTTTTCTATGCTACCAGCACCAGGGTGAACAATTGTGTTGACCACTATATGTAGTGATAAACACAGAGGTAGAGTCATAATTGATAAGGGGTTTGGGTTCTAGAGTCAGCCTCTAAGATGAAAATCACATGTCATCACACCACCCCTTTTTTAAGAAAATTAGTTAAGTAGCTCATGGGTATCTCTCGGCAAATTCAAAGGGCACTGAAACTGATTTCAATCTCTTTGGTTGAACATGCAATGAAGTAGTTGGCTTGCACTTGTGTTAGCTTGGTTTGTCTGGGGTTAAGTTTCCCCACCTTACATTCAATCCTGCCTTAGACAAATGGTTGTGTGTTGTTACTCCACCCTCAAGTTCTCTTAACAAACTACACAAAGGTCCCTTAGCGGAAATAGGTGTATGTTCCTCACCTTCACCTCAAAGTCTTTGACTCTCATAAGCAACAACGGCCAGTAGATATCAGGTAGAGAAATAAAACAGGGGAAGCTGAGATCACTGACTTAATCAATCCATTAATTAATAAAAGTGCCTACTGGATTAATTAATTTAATTAATTAATAAACTTCTGAGACCCCTGAAAGCCATAAAACCTGGAAGGCAATGCCATGCCAATTAAGACTGATACTGAAAAAATTTAAGGAGTCCATTGGCCTCATGACCTCATAAATAGGCTTTGCCTGTTTTCATTTGTGTGATCTTTGTTTCTCCCCACAGGTCAGGGCTTGATAATAGCAAGTATTATTGTTGTTGCTAGTACCAGCACGAGAGAATTCAAATGGCTTTCCTCTTTCTCTTTAG
Seq C2 exon
ACGGTGGATGGATCTCCAGCCAACAGATGTCTTGTGGAGTCTGGGTGATGCCTTTGGTGGATCTTTATCCCTGAGCGCTGTCTTGGGAACTTGGTTCCAAGGAGCCTGTGTGTTTCTGTGTCACATGCCAACCTTCTGCCCTGAGACTGTTCTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173124:ENST00000394005:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.7=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCCCTCCAAAGCAGAC
R:
AACAGTCTCAGGGCAGAAGGT
Band lengths:
294-1378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains