HsaINT1002691 @ hg38
Intron Retention
Gene
ENSG00000173124 | ACSM6
Description
acyl-CoA synthetase medium-chain family member 6 [Source:HGNC Symbol;Acc:HGNC:31665]
Coordinates
chr10:95219891-95225391:+
Coord C1 exon
chr10:95219891-95219971
Coord A exon
chr10:95219972-95225289
Coord C2 exon
chr10:95225290-95225391
Length
5318 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TAGTGATTATCTAATTTCAGATT
3' ss Score
4.5
Exon sequences
Seq C1 exon
GGTCTACTCTGTGCCACTTCCAAAACAATAAAATTGAAGCCAAGCTCTCTGGGGAAGCCATTGCCACCTTATATTGTCCAG
Seq A exon
GTAGGAGATCATAGTAATGATTATGACAGATATTATTAAGTGAGCTCTTACAGTTGTTTATCTAAATTTCTGACATAAAGGTAGGCAATGAGGAAAGTCCACCATTCTCTAAATTCACCCCAAGGATAATCTCACATTATTGCTTTTATTTCCACCTCAATATCCTTTTGGAATACAAAGCCCAGACACAGGAATGAGGGAAGGAGATGCTGACAATTTTGCAGAATATCCCTTTAATGTAGTTCAAGTTTCAAATATGGAGAAATCGAATAAAAAAAATTGCTATTAAAAAGATATGTGCAAAATAAAGACAACTATTTTGAATGCACCATAATAAGCATTCTGTACTTGAACTAAAAATATACTAAAGTGGGAAGTCTAAGCCACTAGTCAGCTGCTCGGGTGTCGATTATTATAAATACTGTAATGTGATTCCCAAATGATGTAGCTGAATTCACAGTATGGGCATAGGAAGCAATACTAAGATGGTAGGGCAAATGCTGTGTCTAGGATTTTATTACATAAAAGCAGACTCAAATTAGCAGCACTTATGAAATTACCATTATTCATTTTAAGATAGTCCTTTGCTTTCACGCCTATCTCGCCTTTTTTTAACATTGGTCAAAAGGAAATAGTAAGTTCTCAACCTGAATGAAACAAATATTAGTATTTACTTTAACTATTGTATCATTCTGAAATTGACCCAATTTTGTTAAAGATAATGTTTACTGTAGAGTTCTATTTTTTGTTTTTTGTTTGCCTATCCAGTTTCACTACATATTATTTAACAGGATGTGGAAGTTAACCTAATACATTGAGGTTTATATGTTTGTTTTTTCCAGTAATCATGAATAGGTACTACATTATATTAAATGTGTTTTCTGATCCTATTAAAAAGGTAAAATAGTTTTTCTCTATTAATAGAGTTAATTAAAAATATTTTCAAATGTTAAATTTTCGTTGCATTTCTTTCTTTTTATTTTCTTGGATTTAATTTCTTAATTTTTATTTGTTTGGGCCTTTGCATTTAGAGACATGAATAAAATGAGCATGTAATTTTCCTCTCAAAAAATAAGAAAAAATTAAAATGTTCCTTGCATACTAAAGTATAAACAAAAATGAAATAAATGAAATTGAAAAATAAAATGTTCCTTAGGATTTTCTTAGAAAAAAAATCTTCCTACAAAATCAACAAACCTTAGAACTAAGAAAAACAAATGAGAAAAATACACAAAGAAATAAAATCAGAAGTGAAAGAGGAGAAACTCCAACTCATGCCATAGAAATGTGAAGAATCCCTATAGAATCCCTATGAATAATTATATGTCAACAAAGCCAGGTGTGGTGGTGCATGCCTGAAATCCCAGCACTTTCGGAGGCCGAGGCCAGTGGATCACTTGAGGTCAAGAGTTCAAGACCATCCTGGCCAACATGGTGAAACCCCGTCTTTACAAAAATACAAAAATTAGCCGGGTGTGATGGCAGATGCCTGTAATCTCAGCTACTCAGCAGGCTGAGGCAGGAGAATCCCTTGAACTCAGCAGGCGGGGGTTGCAGGGAGCCAAGATCATGCCACTGCACTCCAGCCTGGGTGACAAGAGCAAAACTCCATCTCAAAAAAAAAGAAAGGAAAAAAATTATATGTCAACAAAATAGACCACTTAGAAAAAATGGATAAAGTCCTAAAAACATACAACCTACCAAGACTGAATCATAAAGAATTAAAAAGTCAGAACATACCAATAACTAACAAAGAGATTAAATTAGTAATCAAAAACCTTCCAACAAAGAAAAGCCCAGCACCAAATGCCTTCACAGATGCATTCTACCAGAATGAGGGACAAAGATGACATGATAATCTCAAAAGACACAGCAAAAGCATTCCACAAGATTCAACACCTTTTGATGATAAAAATTCTCAAGAAATTGGGTAGAGAAGGAACTTACCTCAACACAATAAAGGCCATATATAAAAAGCACATAGCTAACTAACATCATACTCAATGGTCAAAAACTGAAAGCTTTTCTCTCATATCTGGAACAAGGAAATGATACACATTCTCACCACTTCTATCCAACATAGTATTATAATTCCTAGCCAGAGTAAGTAGAAAATAAAAGGAAAAAAGAAGTATTCAAATCAGAAAGGAAGAAGTAAGATTATCTCTGTTTGCAGATTACATGATCTTATAGATGTGCAGAAAATTATATTTCTACATATGGTATAAAGAAAAGTCTAAAGATTAACCAAAAAAATTAGGATAAACAAATTTAACAAAGTTTCAGGATACAAGATCAATACACAAAAATCAGTTGTGTTTCTATACACTACAATAAATTATCAAAAAGGAAATTAAGAAAACAATCTTGGCTGGGCAAGGTGGCTTACACCCGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACTTGAGGCCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATAAAAAAATTAGCCAGGCATGGTGGCATATGACTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACGCGGGAGGTGCAGGTTGTAGTGAGCAGAGATCACACCACTGCACTCCAGCCTGGGTGACACAGCAAGATCTGTCTCAAAAAAAAAAAAAAAAAGTCTAACTCATAGATCTGGAAAGTGAATTGGTGGTTGCCAGGAGCTGGTGGAGAGGAGAAAACAGGAAGGTATCCACCAAGGGGTACAAAATTTCAGCTACACAGACAGTAACTACTAGAGATCTACTGTACAGCATAATGCCAACAGTTAACAACACTGTATTACATACTTAAAATCTTGCTAAGGAGATATATTAAGTGTTCTTATTACCAAAATAATAATAATAATAAGAGGGTGGGAGGAAACTTTTGAAGGTGATGAATAGGTTTATGGCATAGATTGTGGTGACAGTTCCATGGGTGTTTACTTATCTTCAAACTCATCAAGTTGTATACATTAAATATGTATAGCTTTTTGCATGTCAACTATACCTCATTAGAGGGTTTATTTTTTTAATTCAGGTGAGAAAGGAGAAGAGGACCCACACAAAGGGGGAAGATGAAAGAGATATTTTTTAATTTGTCAAATGAAGTATAACTTCATTCCTTACACTCCCTATCCAAAACACGCACACATACAGACACACACACACACACACACACACACACACACTTCCCACAAAGAAAAACAGGCCCAAATGGCTTTGCGGTGAATTCTATCTAACATTTAAGGAAGCATTAACATTAATCCTTCACAAACTCTCCCCAAAAACATATAACACCAGGATTTTGGAGGCTGTGTCTCAAAATGGGGTCATAGTATGAGCCAGGATCATCCTGATACCAAAACCAAAGACATCACAAGAAAAGAAAACCATAAATTAATATTTCTGATTACTATAGGTGCCAAAAAATCTCAACAAAATACCAGCCAACCTAACAAGGAACATATAAATGGATTATATACCATAACCAAGTGGAATTATTCCAGAAATACAAAGTTGGTTCAAACTATAAAAACCAATTAATACACCATAAAACAAAGTACACAAATCACATGATCATCTCAACAGACACAGAAAAATCATTGACAAAATCTAACACCAACACCTATTTATGGTAACAACCCTCAACAAACTAGCAATGAAAGGGAGCTTTCTCAACCTGACAAAGAGCATACAGAAACCCCATAGCTCACATCAGACTCAACAGTAAAAAACTGAAAGTGCTCCCACTGAGATCAGGACTTATGAGAATATTCACTCTTCATAGAGGTTCTATCCAGAGCAATCAGGCAAGAAAAAGAAATAGCATCCCAATTGGAAAAGAAGAAATAAAACTATCTCTATTCAACATGACATGACCATGTATATAGAAAATCCTAAGGAATACACACACACTATTAGAGCTAAAAATTGAGGTCATCAAAGTTGCAGGAAATAAGATCAATATACAAAAAATTATTAATAGTATTTCTACATAGTATCAATAAACAATCAAAAAATAAAATTAATAGAACAATCTCATTGAAAATAAAATTTTTTAAATCTCATTTAAAAATGTATTCTCTAGATAATTCATCTAATTTACTAGACTTAGTACTAAATGCCACTTCTTTTCCCAAAGTCTAAAGTTCGTCATCAAAGTATAAAGATGTATTATCCCTGAAGACCTCTGATCCTTAGGGCTGGTAGTTTCCATAGAAAAGTTTCCAAGTATTCAGCAAGGATAATAAATTCAAAATGAGTACGCATATTGCTTTCCAAGGTGACAATTTGGAAGGTTGTAGCCCTCAAAATTGAGCTAGCATCTCAGTGTACTTTTTAACTCCTGTCACATTACTTCATGGTCATGCCTTCCATTTCAGGTCAATAAAGAAGCCACTCGGCTGAAATAAGTCATTATTTTCTTTTTTGAGACAGAGTTTTGCTCTTGTTGCCCAGGCTGGGGTGCAATGGCATGATCTTGGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTATAGGCATGCGCCACCACGCCCAGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCAGCCAATAACTCATTATTTTCAAACTGTATTTTATTTATTCCTAACCTGCCCTCTAATTCTTAATAGGAAAAAATAACACCACCTCCTAGACTGTTATAAAACTGCCAAATCTGTTTTTAAATTTTCATGTTCTTTATATTTCTTTTCTTATACATAAGATGGCTAATTAAGTGTCCTTGTTTGAAAGGCCTTTCTGAGATGCTGGCTTTCTTAAAACTTTGTACTAACCAGGCAATGGAGCCCTTACCTGTATTGTCTTATTTCATCCTCACAATAAAGCTGTATAATAGGTGCACTTTAAATCTCTGATTTTCTAGATGAGGAAACTGAGGTACAGAGAAGTATCCAAGAATCTCAGAGTCAGAAGGTGTCAGAGTGGACATGCAAACCCAAATATTTCCAGCTCTGGCACCCTCACACTGACGACTGAACCACACTGCCTCTTAGGTTGCCCAGTATCTAAGTACACCAACCAAGCACTTTCCTGGCATCTTAAATGGGGGTAGAAAGGCTTAAGTTTAGATCTTGTGGTGTTTTAGGAAGAGCACAAGTGGTTTGTAAGGAAAATTCCTTTAGTGATTATCTAATTTCAG
Seq C2 exon
ATTGTGGATGAAAACTCAAATCTCCTGCCTCCAGGGGAAGAAGGAAATATTGCAATCCGCATAAAACTAAACCAACCTGCTTCTCTGTACTGTCCACACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173124:ENST00000394005:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains