HsaINT1002817 @ hg38
Intron Retention
Gene
ENSG00000143382 | ADAMTSL4
Description
ADAMTS like 4 [Source:HGNC Symbol;Acc:HGNC:19706]
Coordinates
chr1:150557945-150558649:+
Coord C1 exon
chr1:150557945-150558149
Coord A exon
chr1:150558150-150558472
Coord C2 exon
chr1:150558473-150558649
Length
323 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GATTCCCCTCGCCCCCTCAGTGC
3' ss Score
7.83
Exon sequences
Seq C1 exon
CTGGGAGGCTGGCGAGTGGACATCCTGCAGCCGCTCCTGTGGCCCCGGCACCCAGCACCGCCAGCTGCAGTGCCGGCAGGAATTTGGGGGGGGTGGCTCCTCGGTGCCCCCGGAGCGCTGTGGACATCTCCCCCGGCCCAACATCACCCAGTCTTGCCAGCTGCGCCTCTGTGGCCATTGGGAAGTTGGCTCTCCTTGGAGCCAG
Seq A exon
GTGAGTTTGCCCAGGCAAGGAGGTGCTGGGGAGGGGAATGGGCACAGGTGAACAACAGCAGTGGTTTTTCAACTTCTTTTTCATCAGCAGAAACTATTTACAAACAGGGTTTCATATGGACCCCCAATATAGAAGTCAGATAAGGGACTGAACCAGGGACTGGGGGCCCAGGGCCCTAGGGCTCAGCCTCCTCCTCAGCCCACGAAGCCATGTGACTGCTGGGCTGGGGATCGAAGGCAGAGCCTGGTTCTGAAGCCTAGAGCTGGAAGCTGGCTGAGAAGGTCTGGGAAGCCCAGCTCCCTGGATTCCCCTCGCCCCCTCAG
Seq C2 exon
TGCTCCGTGCGGTGCGGCCGGGGCCAGAGAAGCCGGCAGGTTCGCTGTGTTGGGAACAATGGTGATGAAGTGAGCGAGCAGGAGTGTGCGTCAGGCCCCCCGCAGCCCCCCAGCAGAGAGGCCTGTGACATGGGGCCCTGTACTACTGCCTGGTTCCACAGCGACTGGAGCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143382:ENST00000369038:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=81.2),PF0009014=TSP_1=PU(12.7=10.1)
A:
NA
C2:
PF0009014=TSP_1=PD(83.6=78.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGTGGACATCCTGCAG
R:
CAGTAGTACAGGGCCCCATGT
Band lengths:
342-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains