HsaINT1003175 @ hg38
Intron Retention
Gene
ENSG00000204305 | AGER
Description
advanced glycosylation end-product specific receptor [Source:HGNC Symbol;Acc:HGNC:320]
Coordinates
chr6:32182568-32183023:-
Coord C1 exon
chr6:32182841-32183023
Coord A exon
chr6:32182699-32182840
Coord C2 exon
chr6:32182568-32182698
Length
142 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
AAAACCCTTCCAACTCCCAGAGC
3' ss Score
5.08
Exon sequences
Seq C1 exon
GAGTATCTGTGAAGGAACAGACCAGGAGACACCCTGAGACAGGGCTCTTCACACTGCAGTCGGAGCTAATGGTGACCCCAGCCCGGGGAGGAGATCCCCGTCCCACCTTCTCCTGTAGCTTCAGCCCAGGCCTTCCCCGACACCGGGCCTTGCGCACAGCCCCCATCCAGCCCCGTGTCTGGG
Seq A exon
GTGAGCATAGGTGGGGAGGGCCCCAAGCTCACGTGAGCACGTTCTGGAAGTCTGACCCTTAGGGAAAGAGGGAGTCAAGCCCATGGCCACTGGGATCACTCACAAGTGTAACTCTCCACCTCAAAACCCTTCCAACTCCCAG
Seq C2 exon
AGCCTGTGCCTCTGGAGGAGGTCCAATTGGTGGTGGAGCCAGAAGGTGGAGCAGTAGCTCCTGGTGGAACCGTAACCCTGACCTGTGAAGTCCCTGCCCAGCCCTCTCCTCAAATCCACTGGATGAAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204305:ENST00000375076:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.891 A=NA C2=0.743
Domain overlap (PFAM):
C1:
PF082057=C2-set_2=PD(51.0=79.0)
A:
NA
C2:
PF138951=Ig_2=PU(44.0=84.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGACCAGGAGACACCCT
R:
TCACAGGTCAGGGTTACGGTT
Band lengths:
257-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains