HsaINT1003177 @ hg38
Intron Retention
Gene
ENSG00000204305 | AGER
Description
advanced glycosylation end-product specific receptor [Source:HGNC Symbol;Acc:HGNC:320]
Coordinates
chr6:32181606-32182388:-
Coord C1 exon
chr6:32182247-32182388
Coord A exon
chr6:32181633-32182246
Coord C2 exon
chr6:32181606-32181632
Length
614 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
GATCCAACTTTGTCTTCCAGAAC
3' ss Score
8.37
Exon sequences
Seq C1 exon
GGTGTGCCCTTGCCCCTTCCCCCCAGCCCTGTGCTGATCCTCCCTGAGATAGGGCCTCAGGACCAGGGAACCTACAGCTGTGTGGCCACCCATTCCAGCCACGGGCCCCAGGAAAGCCGTGCTGTCAGCATCAGCATCATCG
Seq A exon
GTGAGACCTCTCCCCAAGCCCTACAGACCCTGGGACTAGGGTGCAGGACAGCACAGGCTCTAATTTCCTGCCCCATTCTGGCCTTATCCCTAACAGCCACCCCACCTCTCCCTCCATGCACCCACACCCAAGCCTCCCCTGCCCCACCCAAATTCTGCCAAGAGAGCAGCCAAGCCTCTCCCTTCTTCCCTCTGAGCTAAAAAAAGGAACAGACGGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCTGAGGCGGGCAGATCACCTGAGGTAGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCATTTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGCACATGCCTGTAATCCCAGCTACCTGGGAGGCCAGCTACTTGAGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCATAGATTGCGATGAGCCAAGATCGCACCATTGCATGCCAGCCTGGGCAACAAAAGTGAAACTCCATCTCAAAAAAAAAAAGAAAGGGAAAGACTCCACTGGGGCTCCCACTAAATAACCCTCTCTCAACCCGAAGTCTTCCTTTCTGACTGGATCCAACTTTGTCTTCCAG
Seq C2 exon
AACCAGGCGAGGAGGGGCCAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204305:ENST00000375076:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.736 A=NA C2=0.983
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(91.8=93.8),PF066977=DUF1191=PU(27.7=64.6)
A:
NA
C2:
PF066977=DUF1191=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains