HsaINT1003248 @ hg38
Intron Retention
Gene
ENSG00000204472 | AIF1
Description
allograft inflammatory factor 1 [Source:HGNC Symbol;Acc:HGNC:352]
Coordinates
chr6:31615184-31615582:+
Coord C1 exon
chr6:31615184-31615354
Coord A exon
chr6:31615355-31615520
Coord C2 exon
chr6:31615521-31615582
Length
166 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
3' ss Seq
TAATTTTTTTCACCCCACAGGAG
3' ss Score
9.09
Exon sequences
Seq C1 exon
CTGGGAGGCAGAGGAGGAAGGAATGAGGGGAAAGGGGAAGTTTGGGAGGAAGGCTTCTGAGAAGACTGGTGGGAGAGAAGGAGAGCCTGCAGACAGAGGCCTCCAGCTTGGTCTGTCTCCCCACCTCTACCAGCATCTGCTGAGCTATGAGCCAAACCAGGGATTTACAGG
Seq A exon
GTAGGGAGGGTGGGATAGGCAGCGGCATTAGATCGGAGGAATGAGATGGACAGACCTGGGCTGTGGGCTAGGAGGGCAGTCAGCTGGCCTAGGGTAGCCCGGGCTGGTGTCAGGGTAAGGAGAGGAAGGGAGGGATGAGGGCTGATTAATTTTTTTCACCCCACAG
Seq C2 exon
GAGGAAAAGCTTTCGGACTGCTGAAGGCCCAGCAGGAAGAGAGGCTGGATGAGATCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204472:ENST00000376059:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.119
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134991=EF-hand_7=PU(13.7=61.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGCAGAGGAGGAAGGAAT
R:
TGTTGATCTCATCCAGCCTCTCT
Band lengths:
228-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains