HsaINT1003701 @ hg38
Intron Retention
Gene
ENSG00000230453 | ANKRD18B
Description
ankyrin repeat domain 18B [Source:HGNC Symbol;Acc:HGNC:23644]
Coordinates
chr9:33539449-33540212:+
Coord C1 exon
chr9:33539449-33539502
Coord A exon
chr9:33539503-33540077
Coord C2 exon
chr9:33540078-33540212
Length
575 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TTTTTCCTTCGGGGATGTAGTCT
3' ss Score
2.39
Exon sequences
Seq C1 exon
AAGCAGCAGCCATGAAGAATGAAAGTTTTAAAACACAAGGAGCAAGTTCAAAAG
Seq A exon
GTAGGACACCTGAGTGAACTTTGTAGAGTTTATGAGCAGTTCAAATTTACTAGTGCAAAAAAAAATATATGGAGTGCTTGGTAATGAGGTGAAAATAGCTTATAGTTATTATTTATTATACTTAGTACGTGTCAGTGAAGGCAAGCTTAGGAAAGACTTTGTTGTTGTTTTACCTGTGTCTAGAAACAAGTTCAATAAAAGACTTCTAATAGTATAGAAATGAGTAGATCTTATCCTGTAGGCCAGGGGAAACTTCTGAGGTAGAATGCTTTTGGCTGCAAATACTGGAAGACCTAACAGTGGCCAAAACCATAAGAACCAGACTTGTTTTGGTTGTCCAGTGATATTATTGGATTCCACTTGTTCCTCTTTCAGTTATGCTGTTGGCAGTGTCTTGTTCATGTCTCCCTTCATGGTTGGCTACTTAGCAACAGCTCCAAACACCATGTTCTCACAAGACAGTATCTAAAGGCTGGAAGGGCTGCTTTTCTTCACATGTGTCTTTTAAATTGGGAGAAAATTCAGAAGCATGCAGGGGACTTTTTGTAAATTTTTTTTTTCCTTCGGGGATGTAG
Seq C2 exon
TCTCGCTCTATCACCAGTCTGGAGTCCAGTGGCATGATCTCAGATTACTGCAGCCTTCACCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGGAGCTGGGACAACAGGCACATGCGACCATGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230453:ENST00000484634:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCAGCCATGAAGAATGA
R:
ATGGTCGCATGTGCCTGTTG
Band lengths:
182-757
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains