HsaINT1003730 @ hg38
Intron Retention
Gene
ENSG00000180777 | ANKRD30B
Description
ankyrin repeat domain 30B [Source:HGNC Symbol;Acc:HGNC:24165]
Coordinates
chr18:14769343-14772228:+
Coord C1 exon
chr18:14769343-14769373
Coord A exon
chr18:14769374-14772155
Coord C2 exon
chr18:14772156-14772228
Length
2782 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGTATCATTTTTCTTTAAAGTCT
3' ss Score
6.58
Exon sequences
Seq C1 exon
TGGATGTGAGTTCTGTAGAGCCTATATTCAG
Seq A exon
GTAAGACTTTGCGGTTTTTTAAAACGAATAGGTTAACTCAGAAAACATAGAGAAAAGAAATCACTATCTGCTGAGTATTCTACTCTGGGCTAGACAACATATTATGTGCTTAATATTTATCATCTCACATAGTCATCACACAGCTTTGCAAAGCATCTGTGCTACTGTCACATACTTTGTATTAAACAGGCAAATGTGGTTCAGAGAGGTTGATTAATTGGCCTATGATTCATAGCTAAAAAGTAGCTGACCCTTGAGTTTGCCATCTGCCTACTTTGGTCCCTAATCCCTTCTCTTCTCCCTCAGCATAGATTGATGGAGACCTCTGCATCACTGAGATCAAGGTACAGGTCCAGATTGGATCAATTCACAAAGTTACATTTTGTTACAGGTTAACTCTTTTTAGAGTTTTCTCTTAGAACACTCATTCATCAAATACTTTGTTCTAACATGTTTAACTGTTAAAGCGGTAACCAGTACCTTGTTATTATCATCAAAGTGTTTAGAGCAGATCTTACTTAGCTGTGGCCACAAGACATAGGCTTTTGTTTCATAAGAAGACCAGGTAAATCTATAGATGGATTATTTTACTCTTAGTGGAGAATAGATATAGATATGTTATGTTAATCATATTTAGAGGCTATATCTTATAGAATTCTCTATTGACTGACTTCCAAGTTTAGTTTTTCTTCAAAGCAGTTCCCTGCCTAGTTGCAGGCATTTTTCATTTTTTTTCTAGAGTCTTTTTTTCTTCTTCCATGACTTTTCTATAATCCTTTCCTGATTACTTTCTTCTCTGCTTTGCTTGGTGTTCTTTTCTTCTATTGTTTTATTCCTTTCTGCCAGCACCATTTTTCTATAGCTAAAATAAAAGGCACGTGGAATTTTAGGATTTTAAGGACTCTTGGAGGCTAATCAAAATACTTTCATATTTCAACATGTATTTAATATCCTGGAAAAATGGTTGTTCAGATGGAGAGTCTGAAACTCAAAGTGACTTATTTAAATATAGGAGGTAGGAGAAGTAATATTTAAACTGATTTCAAAGCCCATTACTCTTGTTTTTATATCATCATGTAGGTGAGTGTTTGAATAATAGGAAGAGGGAATGGGTCTAATTAAACAAATGGAAAAGGATAAGAATGGAATTAGCTGGAGAACCCAGTGGAAGTAGATAAGAATGGAATTATCAGGGAAAGGCCAAGTTTGAAAAGAAACAATCCCAGGATTGGTAGGAGTAAGGGTTTTACCAAAGAGATCAGAATGTTGGATTTTATGACAAGTTTGATTAAAGATAAATTAGAGGATCAAAAACACAGAAGACATTGGGAGTTATCTAGAAGAGCATACTAAAATAGGGTTCAAAGACGTCCTGAATAGGTCACTGCTTTTTTGCTTGTTTAATTGGAGGAATGGGCAAACTTCAAGCTTTCTATTGAAAGATAAAAAAAAAAAGAGCCACTGGGAAAGGTCTCTACAATCCGATAGAAATGTCCTATTCTGTTCTTTCACCCCAAATCTCACAAGAGTGGCTTAGAGCCCCTTGAATGCTAGGGGATTAAAGGTTGCTGAGTCACATAGATCTGTGGCCCAAGGCAGATGTCCCCTCCCCTTTGTCTCTTTTCCCAAGCCTCAGATGTCCTACCCATGTACATATAAAGCAGGGGTAAGATTGACTGGCAAGTAAGTCGTGGTTCAGTTGGGTTTTTGGTAACATGCTTATGCTGGAGGTGAATGACTGACTGAGACTCCATTTCGTTGTTTTTCAGGAACAGGTGAATACAGAACTTCTTGGTTGGTCATTGAGTTTATCTTTTCAGTAGTCTGTGCTTTGATGAGCTGAATATTTAAAGGTTGGAGACTGCCATGAAGCCCTGCAGAAGAAAGATCTGGAAGTGAGAGAGACACTTTCACTATATATAGTGGCTCCCACTTCCAGATCTTTCTCTCTGTATATATAGTACTTAGAGAAATCCAACTATCAGGTCTCAGTTTTTCTAGCAGTCTCTCTCCTTGGGTATAAGTACCTATGAAGATTTTTAAGGCTTTGCTAGTTTATGTAGACCTGAACAAGGAAGGACAAGTATAAAATAAGTAGTTAGACTTTCTTACTTTTAATGTTTCAATTTTTGTGAGAAAATATTCCGAATAACAAATATACATTTGCAACTTGAAATTTGTAGGTTCAGCTTTTCAACATTTCAAATATTTCAGGGCACTGTTTTGTAGTGTTTCAGGGTGAAGGGAAGCAACAGGGCCTTCTTAAGTGGCTTTTATGTTGAAAAACAAAGAATGTCATTTTCCAGTGACACAGATTAGTCTTTGAATCAGAGATAGACAATGGATAAGGGACAAGGTAACTGTATCTTTCTTCCTTATTTTAGGTTATCAAGTTTGTTCCAGTTTATATATCAAAAGTTATGTCAGCCATTAAGTAGATTTCCAGTTCATCATTGAGGACAGTTTGTGAGGATGAATTATACTCAGGGTATGCCAATTATATTGGCAGTCACTATTTCTTATGGAACTAAGAGTCAGTCTTTATTGTATGTTTTAGGTTGGGGAGGTAGAGTCAAAAATAGGTAACTAAAATCATTTTTAAAAACAGAGGACATATTTTAATTCTACCAAGAAACATGATATAATATACAGAGGACTGGTCTTTCCCCAGATTTTGTTTTTTGTTTTCATTTTATAGAGTGAGCACCAAGATATGAACTAGCAGATTTTCTTTTTAAATATATGAATTTGCTCATTTATGTTGTATCATTTTTCTTTAAAG
Seq C2 exon
TCTTTTTGGCACACGGACTATTGAAAATTCACAGTGTACAAAAGTTGAGGAAGACTTTAATCTTGCTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180777:ENST00000358984:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains