HsaINT1004877 @ hg38
Intron Retention
Gene
ENSG00000033627 | ATP6V0A1
Description
ATPase H+ transporting V0 subunit a1 [Source:HGNC Symbol;Acc:HGNC:865]
Coordinates
chr17:42477660-42478589:+
Coord C1 exon
chr17:42477660-42477742
Coord A exon
chr17:42477743-42478462
Coord C2 exon
chr17:42478463-42478589
Length
720 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TCTGCCTCTTCTCCCCACAGCTT
3' ss Score
12.38
Exon sequences
Seq C1 exon
ATGGCGGATCCAGACTTGTTGGAAGAGTCCTCATCCCTCTTGGAGCCAAGTGAGATGGGAAGAGGCACTCCTTTAAGACTTGG
Seq A exon
GTAAGTGCCATGTCAACTTTTCGGTATTCAGTGGGGCCATGTTCATCTCTTCTGTTCAGAAGAGCAGTGAGACTGGGGATTCACTTGCTACCAGGATATGCCCTCTTCTGAGCCTATTGAGATAGTCCTACAACTCTGGATTCATGCCTGAGTTGCTCTGTCAGCTCTCTGCTGGGTCCATAAGTGAAGCTGGGAATAAGACTTGTATTAAACCAACCCAAATGTCCATCAATGATAGACTGGATTAAGAAAGTGTGGCACATATACACAATGGAATACTATGTAGCCATAAAAAATGATGAGTTCCTGTCCTTTGTAGGGACATGGATGAAGCTGGAAACCATCATTCTCAGCAAACTATCACAAGGACAAAAAACCAAACACCACATGTTCTCACTCATAGGTGGAAATTGAACAATGAGAACACTTGGACACAGGAAGGGGAACATCACACACCGGGGCCTGTTGTGGGGTGGGGGGAGGGGGGAGGGAGAGCATTAGGAGATATACCTAATGTAAATGACGAGTTAATGGGTGCAGCACACCAACATGGCACATGTATACATATGTAATGAACCTGCACGTTGTGCACATGTACCCTAGAACTTAAAGTATAATAAAAAAAGATATATATATAAATATAAATAAAAAAGACTTGTATTAAAACCTTCCATCCCATGACATGGAATAGAGTTTCCAATCTGCCTCTTCTCCCCACAG
Seq C2 exon
CTTCGTGGCTGGTGTCATTAACCGGGAGCGCATCCCTACTTTTGAGCGCATGCTTTGGCGGGTATGCCGGGGAAATGTGTTCCTGCGACAGGCTGAAATCGAGAACCCCCTGGAGGATCCTGTGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033627:ENST00000393829:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.201 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PD(14.0=42.9),PF0149614=V_ATPase_I=FE(3.9=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGATCCAGACTTGTTGG
R:
GTCACAGGATCCTCCAGGGG
Band lengths:
207-927
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains