HsaINT1005653 @ hg38
Intron Retention
Gene
ENSG00000205710 | C17orf107
Description
chromosome 17 open reading frame 107 [Source:HGNC Symbol;Acc:HGNC:37238]
Coordinates
chr17:4899936-4902932:+
Coord C1 exon
chr17:4899936-4900145
Coord A exon
chr17:4900146-4900236
Coord C2 exon
chr17:4900237-4902932
Length
91 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
CCCCTGTGCCCCCAATGCAGATC
3' ss Score
9.03
Exon sequences
Seq C1 exon
GTGGCCCTCCAGCCCCCGCTTCTGTCTTCCCTGGAACTCTCCGTGGCCGCAGCCCATGAATATCTGGAGCAGAGGTTCAGAGAGCTGAAGTCCCTGGAGCCACCCGAACCGAAGATGCAGGGGATGCTGCCTGCCCCGAAGCCCACCCTGGGGCTGGTGTTGAGAGAAGCCACAGCCAGCCTCGTGAGCTTCGGCACCACCTTGTTAGAG
Seq A exon
GTGGGGTACTGGGGGGCTTAGGATACGCGGCGATCGGGTAGCGGGAACAAGGACCTCTGCCTCCCCGCTAACCCCTGTGCCCCCAATGCAG
Seq C2 exon
ATCTCAGCCCTGTGGCTGCAGCAGGAGGCGCGGCGACTAGACGGCAGCGCGGGCCCAGCCCCAGACGGCAGGGATCCGGGTGCAGCGCTGAGCCGGGTAGCCCAAGCCGCAGGGCAGGGGGTTCGGCAAGCTGGGGCTGCGGTGGGCGCCAGCGCCCGGCTCCTAGTCCAGGGAGCATGGCTATGCCTGTGTGGACGGGGTCTGCAGGGGTCTGCCTCATTCCTGCGACAGTCGCAACAGCAGCTAGGCCTCGGAATCCCCGGAGAACCGGTGAGCTCAGGACACGGGGTGAGTTAGGGGCCAGAGGCGGCGGGGCTAGGGAGGCACTGAGCCGGACTGTCCCCCAAGAGAGCTACTCGGGAGACCTCCAGGTGACGTCCAGCAGCAGTGAGGAGGACGGCGGACCAGGGACTCCATCCCCGTACCAGCCCCACCCAGCGTCCGAATAAAGCCCAGGGCGGGGCGAGACAGCCAGAGCTTTTCCCGGGGTCTCTGGGTTTTGGCCACGCCCCCACCCTTCACACTGGCCACACCCCCGCGGGGGCTCCGGCTTCACCTGCCCAGGAGCGGCACGCTCAGAGAAGTCTCTGGGATTTTCTGGGCAATGAGGAACAAGAAGACGGTCTGGGCGAGCAGGACGTTGATGGAGACCGTGCATTTCTGGCCGCCGGCTGGAGGGAGAGCCAGTGAGAGCGGGCCCCGCCTCCCGGGAGCGAGCCCGGGTTTGGGGGTAGGTTCGGGGCCACTGCTTACCCTGCGCCGGCAGGAAGTAGGCGAGCAGCACCAGGCCCGAGATGAGCACACAGGGCACGATGATGTTAATGACGTAGAAGAGCGGCTTCCGGCGGATGATGAGCGAGTAGATGACGTCAGTCTCCCCTGGGCCGTCGGTGGCGCCACCGTGGTGGCGGCGGATCACCCCCGGGCAGAAGTCGATGGCCCACTCGCCGTTCTCTGCGGGACGGGGGCACGGTCAGCTGGCTGTCAGAGCGGGGCGCCCGCCGAGCTGACAGCGGGCTGAAGAGGAGGCTGCGGCTGTCTGCACCAGGGTCATGGGCCGTCAGGATGGGGGCAATTACGGACAGAAAAGGGCATTCTCGTTGAGGGTATGGAAAGCCAGAAGGCAGGACTAGAGTAACAATCGAGAATGATTTCAGGACAGGGGTAAGCTAAACCCAGTTGTGGAAGTCATCCTCCAGTGTCGTTGGTCCGGGGCAAGCCCACCGTGGAAGTCCCCTCTCTGGACCCCGTCTAGAAGCGGGTTTTTCTGAGCAGGCAGGGGCTTCACCAGTATAGGCCTCTGTGTCGATGTCGATCTTGTTGATGGTCTTGCCGTCGTTGTCTACGGCAAAAGTGAACTCCACCTCTTCGGCATTGTACGTCTGAGAGCTGCGGAGCCAGGGCCGGGAGCCCACCCCAGAAGCTCTGACCTGGGCCCCGGCCTCAGGCCCAGCCCTGGAAGCTGGGATCTAGCGGGGCCGCGATCCCAAGCCCACCCCTTCACCCAAGCCCAGCCCGCACGCCTCTGTTCCCATCTGTACCTCCGGCCGCGCTGGAGCGTCCCACCCAGTGCCTACGCCTGGCTCCGCCTCCAGCGCGAAGCCCCGCCCCGAGGGCGGTGCTTCCCGGTTGGCCCCGCCCCATAAGGCCCCCCCCCAACAATAATCGTCCGGGCCTCGGAGTAGCTCTTCCCACCGGAAAATAAGCGAACAGTTCTGCCAATCGAAGGGGAAGTAGGTGACCTCCACTGCGCAGACGCTGCGGTAGATGGCCGGAGGCAGCCACGTCACGGAGCCGCCCTCGTAGACGAGCACGTTGGCGTCGTAGGCCACTCCGAACTGGCCATCAATACTGTGGGCTCGGGGAAACCGAGCTTTTTGCACAGGTCTGCACCCTCTCAGAGTACCCCCTTCCCCAACCAAGTCCAGCCCGCACCCCAGGCCGGCTTCCCTCCAGCCTGGCGTCTGGCCCGGTTCTCACTTGTTTTCCAGCACAATCTCTGGCAGCCACACGAGTTCTGAAGGGACTCGCAGGGTTTCTATACCCCCAAAGTCGTCCTTGCTGTAGTTGAGTCGGTAATCCTGCCAATCCTAAGGGGTGGGGGATGGAAGGCCGCGTGCCCTGCATCTCCCACCTGGCGCTGCCTGGGAGGGGTTTGGGGGAAAAGGGGTGCCCTGGACAAGACCTCACACCATTCCCCAGATTTGACTCACGATTCCAATCCAGACGCTAGTGGTGAGAGTCTCCTCTTTTTCATTCTGCAGATGGGAGATGGGGATGATTGAAGTGAGATTTCAGGGCCAGAAGTGAGCTTTAGGACAGAGCTCAGCGGTTGGGGCCAGAAGTGGGATTTTTGGCTTAAGATGAGGGTGGGGGTAGCTTACCAGTGAGATGAGATTCGTCAGGGTGACCTTGAGGCTGATGGTGACAGTATCCTCAGGCTCCCGCACTGGCCGGCTTCCTGGGTCATAGTTGTTGAAGAGATGGTGATAAAGACGCAGTTCCTCGTTCTTCCCCACACCCCTGCCTGCGATGGGGTCAAGAAGGAAGGGTCATTGGCAATGAAGAGGCTGGAGCACCTCTCTCCCCTCTGCCTCCCCTGGGTCCTCACAGGCCTCTGAGGCTGTGTACTATCAGTATCTGTCTCCTAAACCAATTATGCTGTGCCTGGGAACGAAATACTGTGTCTAAGTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205710:ENST00000381365:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.316
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGAGGTTCAGAGAGCT
R:
CTCCTGCTGCAGCCACAG
Band lengths:
172-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains