HsaINT1006308 @ hg38
Intron Retention
Gene
ENSG00000214711 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
Coordinates
chr2:31178511-31181000:-
Coord C1 exon
chr2:31180936-31181000
Coord A exon
chr2:31178580-31180935
Coord C2 exon
chr2:31178511-31178579
Length
2356 bp
Sequences
Splice sites
5' ss Seq
GACGTATCC
5' ss Score
0.98
3' ss Seq
TACCTTAACCTATTAATCAGCTT
3' ss Score
2.02
Exon sequences
Seq C1 exon
GTCTGGGGAGCAGACAGCCCTTCTTTAGCCTGGAAGCCTGCCAGGGGATCCTGGCCTTACTGGAC
Seq A exon
GTATCCTTTCAGGTTTGTGGGTGGATGCTTGCTGTTGGTTGAGAGCTTCACTCTGGAGCTAGGCAGAGTATATTTGAATCCCAACCCCAATCCTTGCTAATTGTGGGATCCTGGACAAGCCACTGAGCCTCATTATGTATCCAGATGCTCATCTGAAGCATGGAGAGAGTGTTGAAACTTACTTGGTAGGATTAACGTGGGAATGCAAATGAGATAATACAGGTAAAATGCTGGGGTCAGAGCTATCATCTAATAGGTGACCAATATTAGCCATCCATCACAATAATCTCATTTCCTGGGAATGAGGATGAGGCAGCTAGAAGGTGGTGGTTAGTAACAGCTCTCCAGGTTTACAAGAGCCTTTACAAAAGCCTTGGGGCCCTATGTTTTCCATTTAATAACTGGGCGGTGGCTGCCCCCATGCACAGATCAGGAAACCAGTGCTCAGGGAAGTTAAACAACATGCCACAAACTCAGCTGTCCTTTCTCAGCCCTGCAATTTTTCTAACAAACACACTGCCTTTCTAAGTGGATAATTGTAATCAATGTTTGATCATCCATACTATTGAGAGGCATATTGAATAGATAGCCTAAGGGGGGTTGTAAAGACAAAAACAGTCTGCAGAAACTCAGAGACAGTGCAGGATTAGGTGCACGGGCATGGAGCAGGTCCCAGCTCTGTCACCAGCTGTATGAACTTGAACAAGATCAGACCCTCTCCAAGCGCTCATTTCATCACCTGGAACATGGGGAGTTAATGCCGACCTCACCTGCTACAGGTGAAGTGTGTAACTCAGTGATGGATTCATGGTGAGGGCTCAAATAGAGATGGGGTGTGGTGGTACTTTGACCCAATGTCTCTGATGGTAGGGGTATCTGGGCATGGTCTACAAAGCCAACCATTAAACTTAAAAAAATGTAAAAGGCATCATTAGCCACTGTGTGCCTGACTCCTTCCATAAGCTGGTTTTTAAAATAATAATGAAAAAAGGTTACTATTTTTTAAATTTAAATCACATCAAATTGGCCATGTCAAAATATCCTGCCTTGATATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAACAGTCACATGAAAAAATGCTCATCATCACTGGTCATCAGAGAAATGCTAATCAAAACCACAATGAGATACCATCTCACACCAGTTAGAATGGCGATCATTAAAAAGTAAGGAAACAATAGATGCTGGAGAGGATGTGGATAAATAGGAACAATTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGACAGTGTGGTGGTTCCTCAAGAACTAGAAATAGCATTTGACTCAGTCATCCCATTACTGGGTATATACCCAAAGGATTATAAATCATGCTTCTGTAAAGACACATGCACATGTATGTTTACTGCGGCACTATTCACAATAGCAAAGGCTTGGAACCAATCCAAATGTCCCTCAATGATAGACTGGATTCAGAAAATGTGGCATATATACACCGTGGAATACTATGCAGCCATATAAAAAGATGAGTTCATGTCCTTTATAGGGACATGGATGCAGCTTGAAACCATTATTCTGAGCAAACTATCGCAAGGAGAGAAAACCAAACACTGCATGTTCTCACTTATAGGTGGGAACTGAACAATGAGAACACCTGGACAAGTGTGGGGAACATCACACCCTGGGACCTGTCAGGGGGTGGGGGGCAGGGGGAAAGATAACATTAGGAGAAATACCTAATGTAAATGACGAGTTAATGGGTGCAGCAAACCAACATGGCATGTATACCTATGTAACAAACCTGCACATTGTGCACATGTACCCTAGAACTTAAAGTATATATATATATATATATATATATATATATAGAACTCAATAAAGGATGTTAAGAAGAAAAAAAAGTAGGCGTGAAAGGAAGAGGCAATGGGATATGTCATATTTAATTTGTTTATGTTTAGGTGTAAAAGACTTCAAGTATATTAAAATTATATCACCATCTGTTAATACTACTGGTACTCCACTAACAATAATCAAAGATAACATTTCATAGCATTAAAAAAATTCTGCCTCCCTTAATGCTAGCTGTGGTCATCACCATCATCACCTCCATCATCATCGCTTCTCCCAGTGCTGCTGTGCTCTGGGCTCATTCTGTTTTTTCCTAGCAAGAGTGAGGGAGCCCTGGGCTGGACTGGCCAGTGAGGTGAGGCGAACTAGCGAAATCAGACATGATCAGACATTGAATGAGGCCATCCACAAATTGCACATCACTTTGTGGAGGGCTGATCACTGCCTCCAAAGCATGGATAGAACTCTCCCTGGAAGCTTTTACCTTAACCTATTAATCAG
Seq C2 exon
CTTAATGCATCAGGTACTATGAGCATCCAGGAATTCAGGGACCTGTGGAAGCAGCTGAAGCTCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214711:ENST00000398824:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains