HsaINT1006879 @ hg38
Intron Retention
Gene
ENSG00000117335 | CD46
Description
CD46 molecule [Source:HGNC Symbol;Acc:HGNC:6953]
Coordinates
chr1:207767607-207767823:+
Coord C1 exon
chr1:207767607-207767651
Coord A exon
chr1:207767652-207767778
Coord C2 exon
chr1:207767779-207767823
Length
127 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTAG
5' ss Score
3.14
3' ss Seq
ATTATTATTTTGTTTTCCAGTGT
3' ss Score
8.12
Exon sequences
Seq C1 exon
TGCTGCCTCCATCTAGTACAAAACCTCCAGCTTTGAGTCATTCAG
Seq A exon
GTTTAGTAGCTTCTTCCTTATATGTCTTCTTCCTTATATGTTACAAGATATAAGGAATTCCTGGAGAAATTGCCAGCAATAACTCCCAAGTGTTTGGTCCAATCTACATTATTATTTTGTTTTCCAG
Seq C2 exon
TGTCGACTTCTTCCACTACAAAATCTCCAGCGTCCAGTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117335:ENST00000358170:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.344 A=NA C2=0.741
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCTCCATCTAGTACAA
R:
CTGAGGCACTGGACGCTG
Band lengths:
90-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains