HsaINT1007725 @ hg38
Intron Retention
Gene
ENSG00000099622 | CIRBP
Description
cold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982]
Coordinates
chr19:1269337-1271036:+
Coord C1 exon
chr19:1269337-1269410
Coord A exon
chr19:1269411-1270927
Coord C2 exon
chr19:1270928-1271036
Length
1517 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
TTCATTGGTGTCTGCCACAGGCC
3' ss Score
9.1
Exon sequences
Seq C1 exon
TCGCGCGTTAGGAGGCTCGGGTCGTTGTGGTGCGCTGTCTTCCCGCTTGCGTCAGGGACCTGCCCGACTCAGTG
Seq A exon
GTGAGGGCCCTGGCTGCACCGGCTCCGAGGAGCTCGGGGCGGCGGGCGGCCTGCGGCGGCCAGGCGAGGCGGGGCCGCAGCGGCACGCCCCTGGGAGGGGGCGGGCCCGGGGTGGAGTCCGCCCCGCCGGCGGCGAGGGACAGCGGGAGATTGGGCCGAGTAGCGGCCAGAGGGCCTCTCCCCGCCGGTCCGGGCCGCCGGCGACCCGGTTGCCGCCGCAAAATGGCGGCCGCGAGCTCGAGGCTGTGCCCAGCGAAATGGCGGGAGCGCCGAGTTCCCGGATGGAGTGGCGCAGGGTGCGCGCGGGGCGCATGCGCACGCGGCGGGGGCGGGGCCACGTGGCGCCCCCGGTCTCCAGGGCCGCTTTCCCGGCCTTGGGGCTGGAGGTATCCACACACCAACGCTTTTGCTTACCGAGCCTTAGTTTCCTCCTTTTCCCATTGCGATTGCATGAGGGAAAGGACGGCCTCGTAAATCTTGGGTAGGCGTGGCCCGTTCTAGTGTGGTTCCTCGTCTGCCACGTCGTGCTTTGCGCCCAAAGTTTGGTCCAAGTTGGCACAGCTCCCAGTGCCAGACTTCCAAGTCTAGTTCTCAGAGCCACTGGGTGGCGGCCATTCCCAGCCAGTGAATGCTTTGTCTGTGTCAGCACTGACCGCCCCCTTAAATAGCCAGTTCTCCTAAATGCCACTTCCCCTGCCTGGAAATCCTGCCTTATCACTTCCGGGGCCATCCCTTCCCGATTCCCGGCCTAGGTCCTGGCTATGGAAGTCAGTACCTGCCCTGAGGTGCCCCCCAGGACGGGGCGGCCTCCCTGACAGCCAGCCCCCCCCCCAGTCTCAGGAGGCATTTTACAGTGAGCAGAAGCACGTTCTGGTCCAGCAACAAGTAGATGTCAGTTGGTTAGGGTAGGAGTTGGCACCCGTTCGGAAATAGGAGAACCTGAGAGTGCAGTCCTGCCCAGGGCACAACTGGAAGGCTGTGGGGGAAGGGAGACACCCATTGTGGAAATGGGTGCGGCCTGCCTTCAGTCTTGGGGGTGGATGGAGTAAATTATTTGAATTAAGAAGTCCTAGGTGGCTGGGTGCGGTGGCTCACACCTGTAATCCCAAAACTTTGGGTGGCCAAGGTGGGAGGATTGCTTGAGCCCAGGAGTTTCAGACCAGCCTGGGCAACAGAGCAAGACCCCATCTCTACTAAAACAAATTTAAAAAAATTATCCAGGCGTGGTGGTGTACACCTACAGTCCCAGTTTCTTGGGAGGCTGAGGTAGGAGGATTGCTTGAGCCCAGGAGGTGGAGGCTGCAGTGACCCCTGCACTCCAGTCTGGGTGACAGTTAGACACACTGCCCCCGACCCCAAAAAAATAAGTCCTAGGTATGAGTTTGAGATAATGAAAAATAAAAATCTGATTTTCTAATATTTCCCCTAAAAAACACATGTCATTTACATAAAATAGGAAGCGGGGAGAGGTGGTGAGAGATGACCCCTGTTGAGGATTTCATTGGTGTCTGCCACAG
Seq C2 exon
GCCGCCATGGCATCAGATGAAGGCAAACTTTTTGTTGGAGGGCTGAGTTTTGACACCAATGAGCAGTCGCTGGAGCAGGTCTTCTCAAAGTACGGACAGATCTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099622:ENST00000320936:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.001
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=PU(38.0=77.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
ENSP00000322887, ENSP00000412831, ENSP00000464728, ENSP00000464830, ENSP00000464906, ENSP00000465077, ENSP00000465114, ENSP00000465334, ENSP00000465338, ENSP00000465558, ENSP00000465779, ENSP00000466025, ENSP00000466131, ENSP00000466207, ENSP00000466216, ENSP00000466238, ENSP00000466712, ENSP00000467028, ENSP00000467138, ENSP00000467307, ENSP00000467449, ENSP00000467734, ENSP00000467791, ENSP00000467848, ENSP00000467948, ENSP00000468016, ENSP00000468097, ENSP00000468229, ENSP00000468788, ENSP00000486590
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCGCGTTAGGAGGCTC
R:
TTCAGAGATCTGTCCGTACTTTGA
Band lengths:
182-1699
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains