HsaINT1007842 @ hg38
Intron Retention
Gene
ENSG00000213719 | CLIC1
Description
chloride intracellular channel 1 [Source:HGNC Symbol;Acc:HGNC:2062]
Coordinates
chr6:31734154-31736567:-
Coord C1 exon
chr6:31736262-31736567
Coord A exon
chr6:31734264-31736261
Coord C2 exon
chr6:31734154-31734263
Length
1998 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GGGTTGGGGTTACTTTTCAGGCT
3' ss Score
4.59
Exon sequences
Seq C1 exon
CAGGTTCAGGGCGGGGCCGGTCGGTGAGTCAGCGGCTCTCTGATCCAGCCCGGGAGAGGACCGAGCTGGAGGAGCTGGGTGTGGGGTGCGTTGGGCTGGTGGGGAGGCCTAGTTTGGGTGCAAGTAGGTCTGATTGAGCTTGTGTTGTGCTGAAGGGACAGCCCTGGGTCTAGGGGAGAGAGTCCCTGAGTGTGAGACCCGCCTTCCCCGGTCCCAGCCCCTCCCAGTTCCCCCAGGGACGGCCACTTCCTGGTCCCCGACGCAACCATGGCTGAAGAACAACCGCAGGTCGAATTGTTCGTGAAG
Seq A exon
GTAAGAACACTTCTCTCCTCAGCCACCCAAATTCCTGGAAGCCAACTCTCACCTTTCCCCCGGTCCAGCCTTAACTCCCCAATCCCTTCCCTCCTTGACTCCCACCCCCAATCCCACGTGCACTCTTTGGTTGAGGGGTGGTTTTGAGAGGGGAAGACATTAACTTGTTAGCAAGTAATGAGAATTCTAGGATCAACCCTGAAAAGTTTGTAAAAGTGCAAGTTTCTAGCAGACTAAAGGAAGGGAAGTGGAGAAAAAGGAGAATTCCCAAAAGTGAGACTGGGGTGGGGTTAGAGGGCGAGCTGGTGAAGGGACAGTGGGGGCCCAGCAGGGTTTAGAAGGGACAGAGGGGAACCTCAGTTAGGACATGTGTCCCTACAAGATCTGAGGGTGAGTAGTGCAGTAGGAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGATGGAGACGCTTCAGGGAAGACGGTGTGTTGAGGGAGGCCTGAGAGTGAGAGCAAGTAAATTGGGAAGCTTTGGAGGGGCGGAACAAAACAGGAGACTGGGATCGGAGTTTGAAAAGCAGAGCTGGAGAGGTGATCGGGTGGCATTGAATATCCCCAGGACTGGGGAAAGGGACAGAAGGGGAGGTGGCAAGAAGACGTGAGTTTAACGTAGCTACCACAAGGATGGGTGGGAGAGAGATCAGACGGAGGAGAAGAGCTCGGTTAGGGCATTTTGGGATTTGGGGGTTGGAGAAGTAGAAGACTTGCCCCAACTCTCTCCTCTCTCTGCGGGTGTGGGTAAGGAGAGATGGTCCTATGGCATTTGGGTAGCAAAACTGCAGGCAGCAGGCTTCTCGGTGTCACCCAGCCCCCCTCTGATTGCAGCGGCCGCTCCCCTCCCTACCGCTGCTGCATTCATTTCCCAGTCTTGGGACCTCCTGGCTGTGCCCCTCCCTCCCTTCCTTAACAGTGTCCTCTTCTCCCCGCTCCGTTTGTGTCTCTCCGTTGGCACGCACGTCTCCCCACTCTCCACTTTCCTGCCGCCTTTCTTTCCCCTTCCCCCCTTTTGTTTCTCTCATCTTTGTGTGTCTCTGCCTGTGTCTCCCTCTCCCTTCTGCTTGGGTTTCTCGGGCAGCCATTCCCTCTCCCTGGGCCCAGGGAAGTCGGAGCCTGCTTGGGTCCGCCCCCTTAGGTGTGGTCCCCACCTCACTCTCACATTCGCCTCCGGGGCTATTTTTACTCGTGGGTGAGGCTGTGCCGCAGAGATTCCGGCCCTGTGTCCTGTGAGAGGATGGTTATTGCAGTCAGAGGACTTGTGCTGGGAGACCCTGGCAGCAGGTTAGGGGTAGCCTTAGCTGCCCAGGCCTCATCCTCACTGTCCCTTCCCCCACATCCTTGACAGGAAGGAAGCCGGAGACAGAGAGATGAATCACCCTCAGCTTAGGGGGAGGTGTCCCTTGGGCCAATGAGGTCACCACTTGCTAATTAGAGGGCAGCCCCTCTCTGTAGGGCCCTCCACATCTCTAGCGCGAGGCCCAGGGCCCCTTGACTAGACTCCCCACCCAAAGACACCTTGGATTGGAGGTGTAGAGAACCAAAACTCTGGCTCCCAAACCCCACCCACCTCTCCTGTCTTCAGACTCTACTCCCTTCAGGAACCCAGAAATCCAGGCTTCTAGCCTACAACTCTGGCCTCACTGAAGTTCCACACCCTTCCCTCTCTAGGATTCAGATCCTCCCAAGTTCTCCAGGACCTCCTCCCTCTACCTACCTCCCACCTGTCCTCAGTGTCTGGGGAACCAGAAGCCTGCCTTTGCAAAACAGTTTCCCATTGATCTGCCTTAGGTTTGACCCAGGCCCAAGGGCAAAGAGCCCATAGTGAGGGGACAGTGTATGTGTCATGACTAGGCAGAAAACAGCTGGTCTGGGAGTGGGAATGCAGGGACTGGCCTAGGGATGGGTGGGGTGCATCAGGCATAACCTTGGGTTGGGGTTACTTTTCAG
Seq C2 exon
GCTGGCAGTGATGGGGCCAAGATTGGGAACTGCCCATTCTCCCAGAGACTGTTCATGGTACTGTGGCTCAAGGGAGTCACCTTCAATGTTACCACCGTTGACACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213719:ENST00000375784:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134171=GST_N_3=PU(40.8=78.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTCAGCGGCTCTCTGATC
R:
TCCCTTGAGCCACAGTACCAT
Band lengths:
357-2355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains