HsaINT1007858 @ hg38
Intron Retention
Gene
ENSG00000176444 | CLK2
Description
CDC like kinase 2 [Source:HGNC Symbol;Acc:HGNC:2069]
Coordinates
chr1:155268010-155268359:-
Coord C1 exon
chr1:155268293-155268359
Coord A exon
chr1:155268127-155268292
Coord C2 exon
chr1:155268010-155268126
Length
166 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CCTCTCCTGCCAACTTACAGGGG
3' ss Score
8.1
Exon sequences
Seq C1 exon
ATGAAATCGTTAGCACCTTAGGAGAGGGGACCTTCGGCCGAGTTGTACAATGTGTTGACCATCGCAG
Seq A exon
GTAACTGTCAGTCCCTCCCTACTATGTGGGGCTAAAGAGATGGTTGGGGTTATATGGGGCTTTTTTGCTAATTAACCTGAGGTAGAATTTCTTAGTCCCCCTACAGCCCTGTTCATTTTGAGACATTCTTGAGAACCCAGCAAAAGCCTCTCCTGCCAACTTACAG
Seq C2 exon
GGGTGGGGCTCGAGTTGCCCTGAAGATCATTAAGAATGTGGAGAAGTACAAGGAAGCAGCTCGACTTGAGATCAACGTGCTAGAGAAAATCAATGAGAAAGACCCTGACAACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176444:ENST00000368361:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(6.9=95.7)
A:
NA
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTTAGCACCTTAGGAGAGGG
R:
TTCTTGTTGTCAGGGTCTTTCTCA
Band lengths:
178-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains