HsaINT1009268 @ hg38
Intron Retention
Gene
ENSG00000254042 | CTC-558O2.1
Description
NA
Coordinates
chr5:168712285-168712771:+
Coord C1 exon
chr5:168712285-168712380
Coord A exon
chr5:168712381-168712679
Coord C2 exon
chr5:168712680-168712771
Length
299 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
3' ss Seq
CTGGGCCTTCATTTTTGCAGCTG
3' ss Score
8.8
Exon sequences
Seq C1 exon
ATGGGAAAGAGATGTGAGGTCGTTGAAGGAGCCTTCAGGAACGCTGGAAATGTCATTGCCATGGAGGGTTCTGAAGCAGAGGGCACAGGTCGGAAG
Seq A exon
GTTAGCATCCACTAATTTGAATTTAGCATATTCTCAGGGCCTCCAGTGCCTGGCCCTGCCACCCTTCAGTTTTGCTCAGAGCCCCACTGCTCCTAGCAGTAGCTGCTGCCCCCTTTGCTCTGGGTGCATGAATGTTCTATGCCCAGCTCAGCAGCAAGGATGGAGGGAGTAGAGGGTTTGCGGAAGAAGGGGGTGGACTTTTCAATCTGATAGACCTGAGGCGAAATCAGAAACCAGTCTCTCTTAGCCGTGGAATGCTGGATAAGTTACGTCACTTTTCTGGGCCTTCATTTTTGCAG
Seq C2 exon
CTGAGAAAGGAAGAGACCCAAGGGAGTTACTGGAGTTTCAGAGATCATATGAAGAGCTGTGCTTAAGACCGGAAGTTCTGGAGCCAGGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000254042:ENST00000522615:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGAAAGAGATGTGAGGTCG
R:
ACAGCCTGGCTCCAGAACTTC
Band lengths:
188-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains