HsaINT1009691 @ hg38
Intron Retention
Gene
ENSG00000267886 | CTD-2291D10.4
Description
NA
Coordinates
chr19:23095263-23095616:+
Coord C1 exon
chr19:23095263-23095440
Coord A exon
chr19:23095441-23095543
Coord C2 exon
chr19:23095544-23095616
Length
103 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
GACTCTCCCCCTCTTTCTAGATT
3' ss Score
10.95
Exon sequences
Seq C1 exon
GGGACATTGTGTAATATCGTTGGGCCTCACACGTACGTTATGTGACTCTCCTGCGTGTGCCCTGTCCATGTGGGCCATTGTGACATATTGCTGGGTCCAACAACTGGTTGATGTAGCTCTACTGCCTAGGTCCTGCCTATGGAGGACTTTGTGATGTATCCCTGAACCCATCACACAG
Seq A exon
GTAATGCAACTCTATTCTCCTACCTGGCCCCTTCTCACAGAAGAGATTGTAACATATCACTGGGCTAAGCACCTAGCTCACATGACTCTCCCCCTCTTTCTAG
Seq C2 exon
ATTCTGCCCTCAGAGGACATTGTGACATGTCACTGGGCCTAATACTAAGATGACATCATTCTTTAGTTTTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267886:ENST00000594318:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAATATCGTTGGGCCTCACAC
R:
GCCAAAACTAAAGAATGATGTCATCT
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains