HsaINT1010358 @ hg38
Intron Retention
Gene
ENSG00000112514 | CUTA
Description
cutA divalent cation tolerance homolog [Source:HGNC Symbol;Acc:HGNC:21101]
Coordinates
chr6:33417481-33418317:-
Coord C1 exon
chr6:33418087-33418317
Coord A exon
chr6:33417696-33418086
Coord C2 exon
chr6:33417481-33417695
Length
391 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AATTCGCCTCCTGCTCTCAGGCC
3' ss Score
7.62
Exon sequences
Seq C1 exon
CAGCCAGCAAGTGGCAGTTTCGGGTTCACACGGAAACGGGCGTGCCATTTCCGCGCACGTCTGCAGATGCGGTAGTCGATTGGTCAAGTCTCCCATGGCTCCTCCTTCATCAGGAGGTGGGCAAACCGCGCCATGATAGGGTCGGGATTGGCTGGCTCTGGAGGCGCAGGTGGTCCTTCTTCTACTGTCACATGGTGCGCGCTGTTTTCTAATCACGTGGCTGCCACCCAG
Seq A exon
GTAAGAAGAGGCCGCTCTTCCTGGGGTTGTTTCTCCGTGTGACGTGTGGCCTTTGAGATCAACTCTCCTGTACCAGCGTAGGCCGCATGAGTGGGGGGCGGGCTCCCGCGGTCCTGCTCGGCGGAGTGGTGAGTGACCGGCCCCGCCCCGCCCCTTCCGGTCCTCGAAGCCTCGACCGCTACCCGCACCCTAAATCCCAGAGGTTGGCCCCCTGAGGTGTGAGTGAAATGAGCTTTTGCTTTATTTTCCAAGTTTCTCTCTCACCTTCAGGGGCATTCTTCGGGGGTGCATCAGAGGGAGGGCAGAGCCTGAGGATCTAAGCGAAGGCTTCCCCGGGTGTAATTTCCTGGGCTGTTTGTGAGGAGAGATCGAATTCGCCTCCTGCTCTCAG
Seq C2 exon
GCCTCTCTGCTCCTGTCTTTTGTTTGGATGCCGGCGCTGCTGCCTGTGGCCTCCCGCCTTTTGTTGCTACCCCGAGTCTTGCTGACCATGGCCTCTGGAAGCCCTCCGACCCAGCCCTCGCCGGCCTCGGATTCCGGCTCTGGCTACGTTCCGGGCTCGGTCTCTGCAGCCTTTGTTACTTGCCCCAACGAGAAGGTCGCCAAGGAGATCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112514:ENST00000374500:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.201
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0309110=CutA1=PU(46.2=24.7)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGATGCGGTAGTCGATTG
R:
TGGGGCAAGTAACAAAGGCTG
Band lengths:
357-748
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains