HsaINT1010360 @ hg38
Intron Retention
Gene
ENSG00000112514 | CUTA
Description
cutA divalent cation tolerance homolog [Source:HGNC Symbol;Acc:HGNC:21101]
Coordinates
chr6:33417097-33417310:-
Coord C1 exon
chr6:33417251-33417310
Coord A exon
chr6:33417143-33417250
Coord C2 exon
chr6:33417097-33417142
Length
108 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CTCCCCCTCTGACCTTTCAGCTA
3' ss Score
10.38
Exon sequences
Seq C1 exon
GGCCGTGGTGGAGAAGCGCCTAGCAGCCTGCGTCAACCTCATCCCTCAGATTACATCCAT
Seq A exon
GTGAGTCATAGGAGTTGGGGGGTTAACCTAACTGTAGGAGCTGACTGGGAACCTCTTTCCTGGGGGAAATTCTTTGCTCCCCACAACTCTCCCCCTCTGACCTTTCAG
Seq C2 exon
CTATGAGTGGAAAGGGAAGATCGAGGAAGACAGTGAGGTGCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112514:ENST00000374500:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(19.6=100)
A:
NA
C2:
PF0309110=CutA1=FE(14.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGAGAAGCGCCTAG
R:
TCAGCACCTCACTGTCTTCCT
Band lengths:
100-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains