HsaINT1010461 @ hg38
Intron Retention
Gene
ENSG00000231852 | CYP21A2
Description
cytochrome P450 family 21 subfamily A member 2 [Source:HGNC Symbol;Acc:HGNC:2600]
Coordinates
chr6:32039546-32039835:+
Coord C1 exon
chr6:32039546-32039647
Coord A exon
chr6:32039648-32039748
Coord C2 exon
chr6:32039749-32039835
Length
101 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TCTCATGCTTCCTGCCGCAGTTC
3' ss Score
7.73
Exon sequences
Seq C1 exon
GACGACAACTTAATGCCTGCCTATTACAAATGTATCCAGGAGGTGTTAAAAACCTGGAGCCACTGGTCCATCCAAATTGTGGACGTGATTCCCTTTCTCAGG
Seq A exon
GTGAGGACCTGGAGCCTAGACACCCCTGGGTTGTAGGGGAGAGGCTGGGGTGGAGGGAGAGGCTCCTTCCCACAGCTGCATTCTCATGCTTCCTGCCGCAG
Seq C2 exon
TTCTTCCCCAATCCAGGTCTCCGGAGGCTGAAGCAGGCCATAGAGAAGAGGGATCACATCGTGGAGATGCAGCTGAGGCAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231852:ENST00000435122:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.3=100)
A:
NA
C2:
PF0006717=p450=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACAACTTAATGCCTGCCT
R:
CCTCAGCTGCATCTCCACGAT
Band lengths:
179-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains