HsaINT1010527 @ hg38
Intron Retention
Gene
ENSG00000186160 | CYP4Z1
Description
cytochrome P450 family 4 subfamily Z member 1 [Source:HGNC Symbol;Acc:HGNC:20583]
Coordinates
chr1:47115529-47116732:+
Coord C1 exon
chr1:47115529-47115593
Coord A exon
chr1:47115594-47116649
Coord C2 exon
chr1:47116650-47116732
Length
1056 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
GATCTTCACTCTCATTACAGGTC
3' ss Score
10.25
Exon sequences
Seq C1 exon
GAATAACTGTGTTTATCAATATTTGGGCTCTTCACCACAACCCCTATTTCTGGGAAGACCCTCAG
Seq A exon
GTATGATTGTCCCAACTGCACCCAGTGGCATCTAAGATAGCACCAAGAGGGAAGAGAAGCATCTTCACAGTTGAGAGAGCAGTTAGGATAACGATCTGTCATTTAGAAAAGAACAAAACAGAACAAAAACCCTATGCTTTTAAGAGAAAACTACATTTGCATTTATAATCATCACCAGAGTTCCATGATGATGCCTTATCAACAGAAGCATATCATCCCCTGGGAAGTAGAGGGGTGTGATTAGTCAACTGACACTGCACTGTTTAACCACCTTGCTCTCTGCTTTCATTCATGTCTGTAGTCAATCTAGTCACAGACTTGTGAAGTGTATTGCAAATCTCTTGTTACTGGTCATAATTAAAGTAGCAAGATTATGGACTCTTTGCTTTTTTTAAGATTTGAGCATATTTGAAGTTAGTCTCTAGGAATATCACTCTCCTTCACACTCAGTGCTAACCTGAGAGTGAAAGGGAGAGGGGGCCTGGGAGAGAACAAGCACACTCCTGGGCTGCAAACCAGCGCTCAGACCAACCCCACAGCCCAGGAGATACTAATCGGCAGCCTCTCACAGAGACTTTCGGGCAGAAGCTGAACAACTTCAGCTTGTGACTTCAGCTTGTGAATTGCCACCCCTTTTTTCTTTGCCCAAGTCACTGGCTCAGTCCATTTGGAAACCAAGACAAATAGAAAAGATAATAATTTGATGCTTTGCCCATTTTTATATGACAGAGGCACGGGTTTACTGTGAAGGGAAAATAATGAAGTCACTATTTGCTCAAGTCAGATTGTCTGGATGATTTGCTGCTGCTTCTTACTATCGGGGCCTGTTTAATCTATCACTAGGTTATATAGCCTCTGCTTTCTTGGGATATATTTTCAGTGGTAGGCTTTTGGGGAACATCAAGCAGGACTTGTAGTCTCCAGACATTGTAAGTTCCTAAAATTAGCTTTGGAATTCTGTTAACAATATCTATGGATTTCGTTTTTGTTTTTGTTTTTGTTTTTTGTGGGGGTGGGCTGGAGGGATTAGGACTGGGATCTTCACTCTCATTACAG
Seq C2 exon
GTCTTTAACCCCTTGAGATTCTCCAGGGAAAATTCTGAAAAAATACATCCCTATGCCTTCATACCATTCTCAGCTGGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186160:ENST00000334194:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.6=100)
A:
NA
C2:
PF0006717=p450=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains