HsaINT1011452 @ hg38
Intron Retention
Gene
ENSG00000158486 | DNAH3
Description
dynein axonemal heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr16:21117203-21120854:-
Coord C1 exon
chr16:21120740-21120854
Coord A exon
chr16:21117318-21120739
Coord C2 exon
chr16:21117203-21117317
Length
3422 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
GGAATCTGTCCTGTTCCCAGAGC
3' ss Score
6.64
Exon sequences
Seq C1 exon
CTGAAATACATACCACTTAAGTTCTCCTTCACTGCTGCTGCTGCTGATCGGCAATGTGTGAAAGCAGCTGAGCCAGGAGAGCCCAGCATGCACGCGGCTGCCACTGCAATGGCAG
Seq A exon
GTACCAGGGCCGGTACTACATTTGATGAATTACAATGCCAAGAAGACATGGTTTGTACCAGGTTTGAAAACAAGGCCTATGTGAATACCAATGACTTTACGAGACAATAAGGAAAAACAACGTAGACTGAGTTCCCCATCTAGTGACACCCACAGCCCTAGCTTCCTCCTTAAGCCCCTCAGACTGTTTTATCTCTGAACTGGTTAGTGAAGACTTAAAAACATAGTCCTGCAGGTTGACTAAGAAAAATCTTTAAGAATGGCAACTGGTGGGTGTTACCTTCACTCACTGCAAGATCTGCCGTATATATGGTTTAAAAAGAATTTTAAAAGTTAGTTAAGGTCAATCATGGTGGCTCACACCTATAATTTTAGAGCTTTGGGAGGTCGAGAAGCAGGAAGATTGCTTGAGGCCAGGAGTTCAATATCAGCCTGGGCAATATAGCAAGACCTCATCTCTACAAAATTAAATTAGCTGGGGTGGTGGCACACGTCTGTAGTCCTAGCTACTCAGGAGGCTGAGGCAGGAGGATCGCTTGAGCCCAGAAGTTCAAGGGTGCAGTGAGCTATGATTGCACCATTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCAAAAAAAAAAAAAAAAAAGTTGGTAGGGAAAAGCTAACAAGAGACTTTTGAAAATAGAAAATAGAGTAAATAGCATTATTCAAGACACAGAAAGAAAGCAGGAAAGCATATTTGTGAGAAATAATTATTAAAGGGGCTAGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGTAGGCCAAGATGGCTGGATCACCTGAGGTCAGGCGTTCAATACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGAGATGGCTGGATCATCTGAGGTCAGGAGTTCAATACCAGCCTAGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCGGAGGTTACAGTGAGCCTAGATTGCGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAAAAAAAAAAGAATTTTTTTTTTTCTGCTTGAGCCCGGGAGGCAACCTCTACCTCCCAGGCTCAAGCCATCCTCCCATCTCAGCCTCCCAAGTAGCTGGGATAACAGGTGTGCACCACCATGCCCGGCTTATTTTTGTATTTTGTAGAGACAGGGTTCCGCCACGTTGCCCAGGCTGGTCTTGAACTCGTGAGCTCAAGCGATCTGCCTGCCTCTGCCTCCCAAAGTGTGGGGATTATAGGTATGAGCCACCACACCCGGCCGAATGCGATTGTTCTTGACTCCATTTCACAGACTGCTCTACAGGGCATAAGAGAATCCACCACATTGAAAGAGCAGCAAGAGGTATTTCATCCTCTTAAGTTTGAAGACTTCTTCCCATGAGACGATCCATTATCCTGCCCACTTGTGATCTGTCACATGGCCTGGGGGCACCAATTGTGCTGCCCTAAACCATTTCATTCACGCATTGACCAGTGCCAGTCCCTCCATCTCGTTGCCTTTGGCAGCTGTCTGTAGTATGGCTGCAGCAAAGAAGTTGCTCCTCCACTGGTTTCAAAACCTCTGGATTGGCCAAACAAGACACAGATCATTTGCACTTGATTTTCCCCCTTTCTAAATTGATGCATTTCCATCAAAGGCATATAACCCATGTAACTCACTGAAACACTCTGAAGACCTTTTCTGAGACCAGCCACTAAAATCTTTCTTAGCAGAGAGGACAATGGAAGACAATGGGTCCCAGGCAGGAACTTTGCAGCCTGCATGAGCCATGCAAGTGAGAACATTCTCAGAGACACACACGTGCCATGAGGGAGTTAGAGTGACTAGACGTGGAGACTCAAGCCTGCAATCTCAATACTTTTGGAGGCTGAGCCGAGGGCCAGGGTTCATATACAATTACAGGTCCACCTCCATTTTCTGAAAGTTGTGAAGCCAGACCACCAGTTCAAGACCAACCTGGGCAACATAGAGAGAGCCCCTGTCTGTACAAAAATATAAATAAAAATAAGAAAATTAGGCATGGTCGCAGGCACCTGTAGCTCCAGCTACTCAGGAGGCTGAGGTAGGAAGACTGCTTGAGCTGAGGAGTCACATAGCATAGGAGCTATGATGGTGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACCATCTCTTTAAAAAAATAAATAAATAAAAAGAAGTTAGAGAGTATGAATTCTCTCAGAAGATACTTTCAGTGCCTCATGATCATAAAGCCATCGTTTGTTTTCTCTGGGCTTAGAGGAGAATCTAGTACATCTCTTCTTTTTTACAGATGAGAAAATGGGGATTCAGAGAAGTAGTTTAGGCCAGATGTGGTGCCTCATGCCTGTAATCCCAGCACTTTGTGAGGCTGAGGCAGGTGGATTGCTTGAGGTTTGAGACAAGCCTGGCCAACATGGTGAAGCTCTGTCTCTACTAAAAATACAAAAATTAGCTGGGTATGGTGGTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAGCCCAGGAGGCAGAGGTAGCAATGAGCCCAGATCGTGCCACTGCACTCCAGCCTGGGCCATAGAGTGAGACTGTCTCAAAAAAACAAAACAAAACAAAAAAAAACCCACGAGAGAAGTAGTTTACCTAAGGTCACATTGTCCCTCAGTGGCAGATTCAGAATTAGAATCCACGTCTCCAGAATTTTCATTAGAGAGGAAAACTGGGTAGTAGGGGAGGAGGGGAGCACTACGATAGTATTCATTGACTCACCCAGTATTTTTTGAGCACTTACCAAGTGCCAAGCTTTTGCTAGGCCCTGGGGATATAACAGTGAAGAAGTCAAATATGATCCAGACCTTCATGGAATTTGTATTCTATGACACACCTAGAACATCTCATTACACATTCATCTAATTGCAATTGTGATGAGTGCTAAGCAGGAAAAGTTCAGAAGGTGAGCCTGAAACAGGGAAACCAACATCCACTGGAGCGTTGTGGGGCGGTGAGCAGGACAAGGGGGACTCTCAAAGGACAAGACCCTTGAAAGGTCAGGGATTTGAAAGATGAGTAATCCAGGCAAGAAGGAAAGGAGAGAGAACAGAGGTAGAGGAAACAGCAGGGTGATTCCAGCACTATCTAAGAGGAAATAGAGTAAAAATGCAGCTGGCAGCCCTGGAAATGAGTGCATTAGAGAAGGCTTTGCATTTGGGTACCATCTCCCTTCTTAAGTCTTGCAACATGCAAAAGTGGTGTTTACTCTTCAGGTGGAATCTGTCCTGTTCCCAG
Seq C2 exon
AGCTGAAAGGATATAATCTGCTCCTTGGAACTGTTAACGCAGAAGAAAAACTTGTTTCTGATTTTTTGATTCAAACTTTCAAGGTATTTCAGAAAAATCAAGTTGGCCCCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486:ENST00000261383:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains