HsaINT1011927 @ hg38
Intron Retention
Gene
ENSG00000175065 | DSG4
Description
desmoglein 4 [Source:HGNC Symbol;Acc:HGNC:21307]
Coordinates
chr18:31391078-31392340:+
Coord C1 exon
chr18:31391078-31391212
Coord A exon
chr18:31391213-31392154
Coord C2 exon
chr18:31392155-31392340
Length
942 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
AATTGATCCTTGCATTTTAGTAC
3' ss Score
4.95
Exon sequences
Seq C1 exon
CAACACAGTATGTACAACCTGGTTGTGAGAGGCTCAGATCGGGATGGAGCTGCAGATGGACTGTCTTCTGAGTGTGACTGTAGAATCAAGGTTTTAGACGTCAACGATAATTTCCCCACCTTAGAGAAAACTTCA
Seq A exon
GTAAGTTTGTATTCTTATCTTCCTTTTTCCATAAGTGTCAATAATCAATTTGCATAAGTGTCAATAATCAATCATGCTGGCTCATGAGCCTGGTTCTGTCCTATGTGTGGACATACTCAACTTTGTTATAGAAACTTTGGAATTTCTTATGTATACTAATATACCTTCAAATTGTATGTTTGTCTTTGACTCACTACTCCAAACAAGCCTTCTCTGTGAAAGCAACGAACTATCTATTCTGTATACTCTATTCACAGAAACACAGAAATCTGTTGATCTAACTCTGGGAATAACATAGCAACATTAATGTTTTTGTATATGCCTCATGATTTGCTGAATGAATTCTACTAGAGTCCCAGACAGTCTCAACTTCCATTTTCATCTCTAAGCATAAAGAAGCATAAAATCCACACTAGCAGGGCCAAATCTGGCTTGCTGTCTGTTTCGGTTTAAAAAAAAAAACAAAAAAACAAAACAAAAAACGTGTTATTGGAGAGCATAGCTGTCCTCATGCCTTTACATATTGTCTATGGGGGCTTTGTGCTGCAACAGCAGACGTGAGGGGTTGCAACACCAATTCTCTGGCCCACAATATCTAATATATTTACTATTCAGCCCTTTACAGAAAAAAATCTGGTCCTCTATCTAAAAGAAAAGAATAAATAAAGAAAATTAACAATAAGCAAAAATAAATAAATAAATAAAAGAGAAAGGAACAAAGTGCTAATTTGACCTTGATTTTACATACAGCACATGAATGTCAGTTTTATTATCTTATAATCATTTTATTCTTATTCTCCTGATTGGACTATGGGCATTTAATAATGGTGCAAAAATCATCGACATAGTTTGTTGTTAGTATTTTAAATAATAATAATGTGTTTTAAGTACGTTTCTTCTTTTGAAAATTCATTGACTACAAAATTGATCCTTGCATTTTAG
Seq C2 exon
TACTCAGCCAGTATTGAAGAGAATTGTTTAAGTTCGGAACTGATACGATTACAAGCAATTGATCTTGATGAAGAAGGCACTGATAACTGGTTGGCTCAATATTTAATTCTCTCTGGAAATGATGGGAATTGGTTCGATATTCAAACAGATCCACAAACCAATGAAGGCATTTTGAAAGTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175065:ENST00000308128:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(31.3=68.9)
A:
NA
C2:
PF0002812=Cadherin=PU(58.7=98.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACAGTATGTACAACCTGGT
R:
TGACAACTTTCAAAATGCCTTCA
Band lengths:
319-1261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains