HsaINT1012271 @ hg38
Intron Retention
Gene
ENSG00000235947 | EGOT
Description
eosinophil granule ontogeny transcript (non-protein coding) [Source:HGNC Symbol;Acc:HGNC:37129]
Coordinates
chr3:4749192-4751590:-
Coord C1 exon
chr3:4750946-4751590
Coord A exon
chr3:4750011-4750945
Coord C2 exon
chr3:4749192-4750010
Length
935 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATA
5' ss Score
4.19
3' ss Seq
GTCTTTTTGTTCCTTAACAGGCA
3' ss Score
11.28
Exon sequences
Seq C1 exon
CAACTTCTGGGCAAGGCAGAGGTGGGTTTGGCTTTTTAAAAATTTTTTCAGCCTGTCCTCATGGAACTACATATTCTTTTCTAAGAACTTTTCATCCTAACCTCCCTACTCACATCTTCTAAGTGTCTCTGCTCTGGTGGGAATGTGATGGACAACACAGAGCCATCTCAGAAGCCTCTGTGGCCACCACCAGGCCGGCCAGGGTGCAGGGGGCCACTCCCTGGGCAGCCATAGGGTTCTCAGCAAGGTGCATTCGTCGTCCCTGCTGAGAATCTGATGGGGCAGCATTTTTTTTTTTAATTAAATGCAAGCTGAGTCATTTCAACCTGCAACCTTCAGGTAACAGGAGTTACCCAAGCTCCAGGAATTATGATTGTGGGGTAAACCCATTCTCTTGTTTTCTTGCGGTTCTATTTTATAACGCACTAGAGGAGACAGAGACGTCATTGCTTCACCCAGGGCAAGAGGACAAAGGAGGATGCATGGAAATACAAACAGCCCTTCTCCTCCAGGCCATACCGACTGTCCAACTAGCAACAGACTTCACCTGGTTTTGGAGCAATCTGAATTTGGAATATGCCAGAGAAAACTTCTATCAGGCAAGATGGAAGACTCCTAGGATAGGTCTCTCTCATGGAGGGATTG
Seq A exon
GTAATAAAAAAATCATGGGAAAAGAAATAAGGGAGGGTGGAAAAAACACACCTTAGAAAACAACTTCTGATGTCCCGGGGCTACACAATGGGGGAGCTGAGCACTTAGGAAGGAGAGGGAAAATATTCTGTTTCCGGAGACAGCTCCAAGAATCATGAGTAGGTGTGAGAAACAAGGAAGCTTACAGATTTAAAAAAAAAAAGAAAGAAAGAAAGGAAGGGGGCAAAAGGAAGGAGTCAGGGAAGGGGGGAGTGAGATCTTTGAGAGACAGGGGAATTAAAAAACACCATAGCAACAACGCAGTCCACCTACCCTGGCCGCCCACCCACAGCCAGATTCTTTACTGACGCATTTGAGAACAAGCTGGTTCCTACCAGCTCAGGAAGGTGAGCAAACCCAGAGAGCTCATTAAATCCCTTCTCAGCGACTCTTGTCTGCCTGCAGATAGTGAGCAAGGAGGATATAAATAGAAGTTATATAACATCTCTTTGTTGATTCCTGTGCTTACCAAAAAAAAATGCAGCATGACCTTGTTTTTCTTTAGAGTTTGCCTCGGCCTGCTGGTTGAGGACTTTAATCCAGATAGGAATCATCTTGAAGTTTAAACAGCAGGATATAGATTTCCAAGTTAAGGGTGCTCTGCATGGCCATCCAAGTTAGGAACCCACAGGGTCAAGTCCTCCTCCGCGGATTAAAAAAAAAAAAATCCACCAGCTCTAAAACAACAACAGCAGGTATGGAATCTTGTGGCTTCCTCTTAGAACATCTCCTGAGGTAAATTAAGGAGTAAATTTGATACCCAAGAGCAAAGCATCATTAAAATGGCATCTTGGGTTTTCTAAAGGAGGTTCGAGCACCACAGGTATATTCAAAGGTAACTGGTGGTTTCCACATACCCTCCAGGCCTAAGCAGTTGTCTTTTTGTTCCTTAACAG
Seq C2 exon
GCACGATGGTAAGAGTCCAGTGGATGGAAAAGGCCTCCTCCTTAAAGATGGTGATGGAAACGAGCACTGCACAGGGAAACACAAATCAGGTCCCCTGAAATCCAGCCCAACCTGGCCAGACCCTCCAGTGCCCATCAGGGCTTATGAACAGGGTGCTTCAGTGTCTTTGTTAGGGGTGGTTAAAAAGGAGCACGTGCTTATAGGGGATGCTGCTGAGCTCCATGATTTTGACTTCCTGTCTAACCTGTTGATGCTACAAAACTCTTTTAAAAACAGTTACCATGGGAACTTTTCCCTAGCAAGCATTCTTCAAGAAACGTTACAGGTGCTGGTGAATTCAATGCCCTTGGTGTCAATAAGCTTTTGCTGAGTCTTAGAATGTGTGGCTTGAACTGAGAGGACTTTCAAACAGATAATGCGAAGTTTCCAATGCAAATGTCTTCGGGGTTAAGTGTCAGTGAAGTGCAGTGGAAGGTAGGGGGATAAAATGATCTCAGTGTATATGGAGGCCCCACTTAAGCATTCAAAAAATTCTATATACAGTGTTTTCAATGTATTATGTATCAGCAAAACAAAATACCCCATAGGGCTATAATCAGCTCAGGGGGTCACCTCAGCAAGAGATGCTCTGGCTATCACTCCTACTACGGGATTTCCTCTCTCATCAGAACCAGTAGGTGGTCAAAACCACAATAATGCATAAATGAAGGCAGGGAATTGGGTATCCAATGTGAGCAACTGAAAAGGTGCCATGTATTAGCTATTTGCCATTATGGTTCTGCAAGTGCTCAGATGACTCATAAAATGACCAGAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000235947:ENST00000414938:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGTTACCCAAGCTCCA
R:
AGGAGGCCTTTTCCATCCACT
Band lengths:
342-1277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains