HsaINT1012812 @ hg38
Intron Retention
Gene
ENSG00000214860 | EVPLL
Description
envoplakin like [Source:HGNC Symbol;Acc:HGNC:35236]
Coordinates
chr17:18388219-18389647:+
Coord C1 exon
chr17:18388219-18388288
Coord A exon
chr17:18388289-18388856
Coord C2 exon
chr17:18388857-18389647
Length
568 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GACCCTTTCTCCTTTTTCAGCTC
3' ss Score
11.68
Exon sequences
Seq C1 exon
ATTCTGTGTCCATCTTCCTCTCCTCATTGACTCTGCATGAAGGGGATTTCTGGTGGAGTAAGGGTAGCAG
Seq A exon
GTGAGAAATGAAGTACCAAGAAACTAGCAAAGGGTCTTCTGGTTGTCTGGGGACAGTCCTCCTGTCATCCCCAGCCTAGTCTCAAGGGTTCTGGGCCGGTCACCCTGCTGCCTCTGTGCTGTGTCTCTGGATCTGGCCTCCATGGGAAGGACCCTGGGAGACCCAGCAGAGTGGGGTACCTGGGTTGACAAACAGCTTCCTGTTCCTCTGGCTATGTGGCTCAGGAATAGGCCCAGACAGTGCATCCAGATGTGTGAGGCCACATCACTGCCCCCTTTGAGATGGCCCAGAGGACCTTGTGGCACAAGCGTGAAGCTCAGCACCCGGAGCCTGGGACAAACTGCCCCTCCCTGTGTCCTGGAGTTGGGGTCCGGTCCCGAGAAGACTCTCAGTCACCTGTGGGTGCTGATGAGGGGAGGGAGAGGTCTGTGGACTGAGAAGGGCCATTGGTAGGGGACTCTGAACACCACCGCTCAGGGGTCTGGTCAGTGGGGGTCTGGTCAGCAGAGATTGAACTCTGGGGCTCAGACACAGAAAACCTGCTCAGTGACCCTTTCTCCTTTTTCAG
Seq C2 exon
CTCTTGCCGCACGTGCAGAGAGAGAGGAACTTCCAGTGCCCGCTATGGAGCCACAGCCCACAGCATGGGGAAGTCCCCATCCAGAGGCAGTGCTGCAGCTAGAGGTAGCTCCAGAGTCCTCCGGGCCCTGCACCGATACAGCCAAAGACCAGCAAAGCGACAAGCTGCCAGACCTCATGCCACCTGCTGTAGCCACTGGGCTCAGCCCTGGAGCTGAGAGCATCGCTGGAGATAGACGTGGCAGAGAAGAGGTTGCGAGCATGGCCCCAGCCAGCAGCTCCCACGCTGCCCCTAGTCCTGGGCATGGAGCGAGCCTTGGTGTCAGAGACCAGGGTGTGCAGTCTGAGCTCCTCTACCTTACTAAAGAGAGGCCTCTTTTATTTACCAGAGCCACAGCCCTGCTGCCTCAGGACCTTTTCATTCTGCCGGTGCTGGGGCTGTCTATCTGCAAGCTGGAGGTGTTGAGAGCAGGAAAAGGAGGCTGTGAGGAAGGGTTCGGGCAGCTCCTCCTGCTCTCAGAGGTGGCCTCCTCCTCCAGGCATGGAGGTCTGTCCACTACTGGGCTTCTGGGCTATTTGCCCCTGATTTGCTCCCTGGTACGGGCTCTTCTTAACAGGCAGGCAAGGGGTGCGGGGACCAGGTGAGGGCTTCAAAGGGTACAGTACCAAATCTTCCAAACTCAGCACTTGTGCCCTGGGGTCTCCAAACTGTCTTCTGCCCTAGAATTTATTCATACTGTTAAATTACCAGTTTATGCAAATGATATGTAAATAAAGCTCAATTTTTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214860:ENST00000399134:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTGGAGTAAGGGTAGCA
R:
ACCCTGGTCTCTGACACCAAG
Band lengths:
357-925
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains