HsaINT1014026 @ hg38
Intron Retention
Gene
ENSG00000250208 | FZD10-AS1
Description
FZD10 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:48632]
Coordinates
chr12:130144315-130154688:-
Coord C1 exon
chr12:130154473-130154688
Coord A exon
chr12:130153599-130154472
Coord C2 exon
chr12:130144315-130153598
Length
874 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTTTTTTTTTGTATTTCAGTAG
3' ss Score
8.73
Exon sequences
Seq C1 exon
GAAGTCAGTCCCAGAATAGTTGTTCTGCTCCCTCCCTTCTAATAAGTGCTGCGCTGAGTGTGCTTGCTTTGCCAGATGGTTAAAACAGAGCAGGGGATAGAAGGACAGATGTCTTCACCCTCATGGAGTTCACCTTCCAGTAGGAGGAGGCGATAGGCCGGGGTCTGCACATGTGCGTGCTACAGCCTGTTCCACGGTGCGTGGCGTGCGGGGCAG
Seq A exon
GTGAGCGGCTCATGCCATCCAGAGAGCTAGGAAAGGGGGGCTGCAGTTTTAGCAAGATGGGCAGGGAAGGCCTGGATGAGAAGGAGACCACTGAGCAAAGACACCAGGAGTGGGTGCAGAGAGCTGAGGGCACTTCTAGAAGTGCCTGCTGGGATAATGGGGTGTCTGCCAGTGCCACGGCCCTGAAGTGCCACTATACCTGGGGTTTTTGAGGAAGAACAATGGGGCCAATGGCTGGAAGTCAGGACATAGGGGCCAGCGTCAGAAGGTAGCTGACAGAAGAGGTGTGTGGAGAGGAAGTGGGAGGGAAAGAAATCGGGCCATGATGGCGTCTATGGGCCTTTTGATTTTGACTCTGAGTGAAATGGGGAGCCACGGAGGGTTCTGGAGAGACGAGAGCCATGCTCTGACTTCAGTCTTCCCAGGACCCTTCTGGCTAGTGCATCAAGGACACATAGTGGCAGGGAAAGAGTGAAGCAGAGAAACAGTTAGGAGACAGCCACAGTGGTTCAGAGGAGATAGGCTGGTGGCTTGGACCCCGGAGGCAGAAGAGGCCACGGTCAGCAGGGATTGGATTCTGCTTAGAGGGCCACCAGGCAAGCCTGGGCCGGCTGTCCATTTTGACCATGGACCAAGGCTGTCCATTTTGATGGAAAACTCATTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCCCTGTCACCAGGCTGGAGTGCAGTGGTGCGGTCTCAGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTTCCCTGCCTCCCGAGTAGCCTGGACTACAGATGTGTGCCATCAAGCCCAGCTAATTTTTTTTTTTTTTTTTTTGTATTTCAG
Seq C2 exon
TAGAGACAGGATTTCACCATGTTGGCTAGGATGGTCTCGATCTCCTGACCTTGTGATCCGCCCCTCCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCCTGCCAGAAAACTCATTCTTCTACTCCATCCTACAGTTTTCCCTAAGAGAGAAACAATAAAACGCCACCACGACCAATGGCAAAAAGCTGGCACCCACTCCACGACTTTTCATATCTACACGTTTGTACAGCTTTATTTTTAAGCATTCTGAAATTCTATGCAGGAGAGACCCCAGCTAGGTTTAGGGAGTCCTAGGGTTTGTGGAGTAAATGAAGTTTCTCCCTAGAATTAGGGAGGGTAGAGACAGGCAGAGAACTGACAATCCTAACAGCTGCTGTCCTCAGAGCCACTGTTTCTGAGAGCTGCTCGCTGAGTGCTTCTAGCGAGTTAAATGGTGTTCGCCCAAAAGACCTGTTCACGTCCTGATCCTGGGAACCTGTGGCTGTGATCTTATTTGGAAAAAGCTCTACATTACGTCTTTGCAGAAGTAATCATGTTAAGGATCTTGAGAGGACGTGACCCTGAATTATCCGGCTGTGCTTGACATCCAATGACTGGTGATGTTGTAAGAGAAAGACGGAGGGAGATGTAAGATATGAGAGAAGGCCACGCCGAGACTGGAGTGATGTGGCCGTGAGCCGAGGAATGCCTGGAGCCACCAGAAGCTGGCAAAGGCAGAAGGAGCCTCCTCTGGACCCTGTGGTGGGTACGCAGCCTGGCAGATATATTCATTTTGGACTTCTGGCCTCCAGGGCTGTGAGAGAATACATTTCTGCAGTTTTAAGCCACGCAATCTGTGTCCCTGGGAAGCCCAAATAGGGCGAGACCTTTTGCCAAGTGGTCTCCAAGTGTCACGTCATCGAATCCTTCTCCCGGGCTTGTGCCATAGTCTTTCCACTTTAGAGAGGAGGAAACGGAGGCTCTGGGGCACAAAGCCAGTCAGTGGCGGGGCCTGACTTTCAACCCAGCCTGCATGGGGTCAGAGAACCCACTTTCCCCGTGGGGCCTGCGGCCTATGCTAAGGATGCTTGTTCATCTCTCCTGGGCCCGGGAGTGGTTCTTCTGGCCTAGAAGGCAAGAGAAGCCAGTCTTTCGGTTTCAAGGTTTCCCATTAGTGGAGTCAAGCAAAAATGGTGTGTTGCGCTTCTTCCTGAGCTCAGCCTGGGAGCACGGCCTTAACATGCTCAGTGGATCCCAAGACGGCAGCATGGCGGTGCCAGCCTGGCAGCCTTAGCTCCTTGCAGCTGTGCTTGTGAAGGGAGCAGTGAGTGGCTTCCCTCTGTGACCACCTTGGGTCCTAAGTTTCACTGGGGCTGGGATCCATGCGTCTTGCAATTGGCTAGGAATTTCCCGGGCTTTCCCTCCCTTCCCTGTTCAGGGCACTGGGTGTGAGGCATTGCATCCGTTCTTCTGCTCACCTGCTTCCCCCTAAGAGTGTGAGCTGTATAAAGGCAGGAACCAAACAGGAGCCTCCACGTGTTCCCAGTTCAAGGGCAGTGTCCCTTGTGTGTTTCTTCAATAATTCAGTGGATGACTTATTCTGCACGGACACTGCACACACTCGGCCCTGCCGTCTCCGGAGCTGGGAGGTGTGGAGCTGGCTCCTGACCTATTTACACACTGAGGAGGGATGTGGAAAACAGGAGGAGTCCCAGGGCTCCAATGCAAAGAGGAGCCTCTTCATTCCCTCTGCCGTGGCCGTGCAAGGGACAGCGCCTTGTGGGATTGTGTCCTCCACCCAATTATCCTTAGCATTAGTTTGCTAAGGATAATGGCCTCCAGCTCCACCCATGTCCCTGCAAAGGACATGATCTCATTCCTTTCTGTGTCTGCATAGTATTCCATGGTGTATATGTACCGCGTTTTCTTTATCGAGTCTATCATTGATGGGCGCTTCAGTTGATTCCATGTCTTTGCTACTGTGACTCGTGCTGCAATGAGCATTCGCGTGCATGCCTTTATGGTGGAATTATTTCTATTCCTTTGGGTGCATACCCAGTCATGGGATTGCTGGGTCAAATGGCATTTCTGCCTCTAGGTCTTTAAGGAATTGCCACGCTGTCTTCCACAATGCAAGCAAGACGTTATTGAAAGTGTAAAGGGGGCTGCTAATTACGCTGGGGCAGGCGGGGCAAACCAGGACCCTGCCAGGCGAGTCTAGGCCATGGCCCCACACCAGAAGATGAGGGCTGGAGACTCCTGGAGAGGAATCTGAGTGGCGAGACCACCTGCATTCATTATGTGTCAACTCTGCCAGGTGACAGTCCCCAGTGAGCCCATCAAACATGAACCTAGGTGCTGTTGGGAAGGTCTTTGGATGCCATTAACATCTACAATCAGTTGGTTTTCAGTAGAGGAGATTATCCTCAAGAATGTGGGCGGGCCTCATCCAGTGAGCTGAAAGGCCTTGAGAGCAGAACTAGGATTTTGGAGGAGGATGAAGTGTTGCCTCCGGACCGCAGCGTCACCTCTTGCCTGGGAATTTCCAGCTTCCTTTTCAGACTTCGGACTTGCCTCCAAGCTCCCTGAATCTTTTCATATATTTATGTCCTATTGCAGATTGTGTTTCTCTGGCTGGACTGTAACTGATGAGGAGGACTGAAATTCCAGGCTTGGTTGTATAGCATATAAGTGAGGTCATTTGGGTCTGGGGAGCTGGGGGGGGGGTCCTTCAGCTGCATGAGTGTGACCTGCACCAAGGTGCCTGGCTACCTGGGGCGAGGGGGCTGCCATCTAGCCCACACCCCACTCCTAGGCCGTGCACCCTGGCATGGGTCTATGTCTGGCTCAAGGAAGGGTTCCCTCCTCCCTCCAATGTGCACAGAGACCTTGAGATCCCATCCACCTAACCCTGTGCCCTCAGAAGCCTCCTCTGAGAGGGGGCACCTTTTCCTAATTCTCACAAAGGCTAGTGGCTACCTTGTAGATAGCCTTGGATGTGTTAGGACACTTTTCTGAACATCAGTTCCTTATCTGTAAGATGGGAGTTGTGTCCTCAATGGGTAATTAGAGATTATTCATGGGAAATCCTATCACGGTATCTACCACGGGGAGACTCACAAGTGCTGATCTTTGCTGGTGTTGCTGCATTTGTTATTGAATGCATTCGTTAGGAGTCTTGTTAGTAAGTGACAAAAATCCAACTCAAATTGGCTTACACTAAACAAGTTTCCTGCATCTGGGAGTATAAAGGGTGACGCTTTGGCAGAGGCTGGCTCTGGAAAACGAGGACGCACATTTGTGCCCCCACTTTCCTCTGTGCGGCGTCCTTCTCTTCAAGGCTTCCCCCAGTTTGGCAAACACGGCCCCAGCAATGTCAAGCTGAGAGCACCTTTTAAGAAAGACCCTTCCTTCCATGTGTTTTGGCAAAAGTCCCATGAAGCAGTATGAGTGGCCCGGTTTGGGTCATGGGCTCACCCCTAAACCAGCCGCTCTGGATGGATTAGTTCCAATTGGACAGGCCATGGTCTTGGACTCTTTGGGTGAGTGTGGGAGGGTGTGGGAGGGAAGATTCATTGAACCTCATCTCTACTACATGGTACAGCTCCCTGGAAGAAAGAGGGGCTCCATTACCAGAAGGAAACAAGGAATTTTATGGGGAACCACATTATCACTACCACAATCTACCATGCTATACATAAGAAATGCACCTTGGTCTTAATGCACGGTCTTGAGGGGGTGCAAGCTGAATCCAATTCCCAGCGTCTGGGTCAGTGTCCCTCATGGGGGAGCTGCCTCACTTAAGATTCCTTTGGATAGGTAAGGTAGAACACCAAGCTGCGCGGGATTATGAAAAGAAAGGGAGAAATTCACTGGCTCGCAGAATTGAAAAGCTGAGATCCAGCTGTACTTTTAAGCCTGAGCCATTCTCCAGCTCCTGGCCCTGCCTCTCGCTGTCTTGGCTTCACCCTTCACAGACTGCCCTGCAAGGACCGAGGTGGAGTCTCATTGGACTGGCTCAGGTCGTGTGCCTAGTTCTGAACCATCCACTGTTTCCAGAGGGATGGGGTATCCTGATTAGCCAGGAAGAAGTCAGACGTCTCTGAGCTAACTTTACTGAGAATTGGGTAGAGGAGGTCCCCCAAAAGTAAAGTTGGGCACTGCAGTTCAGGAGAAGGGTGATCACTGGTTGCTAAGCAACCATAAAGTAGCCAGCATCTCCTGTGGGTTGGGGTTTGCGCCTGTGAATGGACAAGTGGCACTCGGAAATTAAATGCAGTGCATCCAGTGCTCAAGCTCCTGGGCTTCGTCTGCTCCACACTTTTTCCTCTGCCCTTTGGGCTAAAGCCGTTGGGTTTGGGACAAGAGAAGGGGAGAGCTGGTACCTCTTCCCTTTTTTGCCCAGGAAAGTTGTTTCTCCATCATTTCATGGCTCAAAGTCATTAAATCTGAGTAATTCTTACAAACCAGATCCAGGAAGAATCTAGGAGTGGGCTCTCTGTAGATTAGAATGCTTCAGGCTGCAGGTAACAGAAGACTTGACTGGAAATGCCTTCAACAGAGAAGGGATGTATCATTTTCTAGAAGGAGAAATTCTGCAGCTGGGACGGTTCCAGGGTTGGTTTCTTTGGAAACTCAGAACTTCATCGAGGCTCTGGATTCATTTCTTCTTTCTGCTGTGCCATTTCCAGCCTGTTGACTTGGCCTGGGCCAGCTGTCCTCTCACGCTCATGATTGCTGCCTCTGCTCCTGCCATCACATACACAAGCAGTGCCTGTTCAGTGGAACAAAAGGAAATCAAAAAGAGGAATCACATTGTCCTGTGTCTCTACAATGTTTTTTTTTTTTTAAATCATGAAAACCGTTCCCAGAAACCCCACAACAGACTTTCTGTTTCATCTCATTGGCCAGAACAGTATCACAGGAGACTACTGGGATTGGCATAGACTAGCTAGGATGCACCCTTAGAGCCCGTGGAGGACGGCAGACATCTGAGCAGAGCTGGGCCTCAGCGGGCAGGGGATGACAGGGACTGGCAGGCATCCTTTTGGTCACTCAGAGGACTTCCTTCAATCCACCCAGGGCTGGTTGGCATCATAAACTCAGGATGGCAGCACTTGGATGGCTGTGGTTGCTTTGTCTCCAGTGAGTGCCCCAGGAAACCATCTCTTCTGGTCGCCACACGGCTATTTGGTGAGCTGCTTGCTGGGGTGAGCTGCTGCTGAATGGGTGTGGTTGAAACTGGAAGGGTGAGGTCCCAAAGCCACTGTCTGCCCCTGGGTGACTGCAACAGGTAGCCCCCCCACCAACTTCCAGGCAAATCCGTGGGAAATGGAACAAGGTATCAAGGGGAACAGGGGAGTCAGGCCACCAGGGCCCCACTGAGGAAGGCACCTGTTGCACCATATTTTGACGTCTTGAATGTGTATCCACTGGCCCAGGGAGTGGCTTAATTACCAGTGTAATAGCAGGTCCACTTACAGCTTCAGGTTTCGTAGAGGAAAAAGCATCATTGCAAAATGCTTTTGATGTGGTTAAGCGGTGAGGCCACAGTGAATTTTAAGTGCTTGGTAAAGCGCATGGAAAAAGAAAAGCACAAGTCATACTTGGTAAAGGACATTTCCCTTCCTAGATGCCAGGTGTGAAAGGATGCCAGGAATATTCTCTGCTCTTTCCTCCTGCTTCCTGAAGGACTGAGTCCACACTAACTATTATCAAACAAACAAACTTCCAGGGGAAAAGACTGCAGAACCTATACATTCTTTATAATTGGAATCACAGCTATACATTCTTTATAATCAGAATAACAGCTCTACATTCTTTATCATCGCAGCTATACGTTCTTTATAATCAGAAAGTGCTTTCTGGCCAGGCACGGTGGCTCATGCCTGTAATCCCAGAACTTTGGGAGGCCAAGCCAGGTGGATCACCAGAGTTTAGGAGTTCGAGACCCTCTGGCCAACATGGCAAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAAAAAGCCCAGTGTGGTAGCAGGCGCCGGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACTCAGGAGGCGGAGGTTGCCGTGAGCCAAGATCACATCACTGCATTCTAACCTGGGCAACAACAGTGAGACTCCATCTCAAAAAAAGAGAAAAGTGCTTTCTGCTGTCTTACTGAGGTCCCTGCTGCTCTGCTAACTCCTTCTCAAGCTGAGAGGTAAAGCAGGTGCTTTACTTCTGTGTGGTCATGTGTTGGGTGCCTGCTACATCAAAACGCTCTTCCATATGCAGAGAAAATCAGAAGGAAGGGAGCACTGAGTGGCTAGTGGGCAAAGGGGAGAGACAGCGAGACCAACACATGCCACAGAGCTGCCTTTTATATGAATTCAAATTCTGGGATTTCGGACTAGGGCAATATGACAAATATTCATGGACTTTCACTAGACCAAAATTGGAATAAATGCTACACACACCCCAATTTTTAAAATTAGTAAAAACATGTGACTTTAAAGCAGGCTGCCTACGTTGATAATAAACCACATTTTCCCTAACGTGAAAAGTCAGTGCCATTCGAGCTTGTCGACAGAAATACAGAACAATTCCTCAGTGATGTGTGCTTCTTTGCAAAAATCAGCCTTGAATTATGCAGGTTTGAAATAGGCAAAATCTTCCTAAACAAATACTTTGCATACAATACCTCCAACCTCTATTCCAGTATAATGTTTAAACTCTGTGCTAGATGTCCACTTAGTTCTTTCATTGATGTGAAGCTATTTCATTAGGAGTCAGCAACTATGCCCTGTGATCTGACCCAATGCCTGTTTTTGTAAATAAAGTTTTATTGGCACACAGCCACACCCATTCATTTACAATTCGCAGATGGTCACTTTCTCACTCCAATGGAGTGGTGGCCACAGAAACCGTCTGGCCCAGATGTCTAAAACATTTATTATCTGGATCTTTATAGGAAATGTTTGCTGGCTTTAGAGCGAGGAGTTTCATCACTAGGATAAGCGACTCCATTTTCTTTTACCTATGGAGATTTCTCAGCCTTGCTGCACCTTATTGCTATAACTCTGTGACATATTGGTGGCCTCTACGCCACCTCTCAGCTGTCTGGCCTGAGAGCTCTGTCCAGACGGATTGACAGAGGCCAGTACCTGGTGAAGAAGGCAGCATCTGAGAGGAGCCAGGGATGCATTCATTCACCCTTTCATTCAGTCATTCAGCGAGGGTGCAGCACGCATCAGCTCTGTGCAGGCACTGTGTTAGGAACTGCAGATACAGCCACGGCCAGTAGAAAGGGCACCTGTTCTCCTTTTGTTTGTTTTTGTTTTTGTTTTTGAGACAGAGCCTCACTCTGTCTCCCAGGCTGGAGTGCAGTGGCACAATCTAGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAGTTCTCCCACCCCAACCTCCCAAAGGCTGGGATTACAGGCATGAATCATCGCGCTCAGCTGGCACCTGTTCTCACTAGGATAGATATCATAGCGGGGGAGACGTTGGATGGACAAATTGGCAAGGGGGATAAGTTCAGGCACTGCCGTGTGCTGTGGAGATAATAAAAGGAAAGTGGGACAGACAGTGGGGCGTGGGGAGGCTGCCTGCTTAGCTGAGGCGGTCAGGGCTGGCTCTGAGGAGGTGACGCATCCCTGAGAGCTGAAGGAGGAGAGCAAGGCAGCCAGGCAAAGGTCTGGCCGTGAGGCTCTGACTGTGCCTTCGTGCTGTTGTTCTTTGTCGATGCACTCACCCAGGAAGCACTTGTACCCCGTCATGGCGCTAGAATATTAACAAATCATGGTCCCTGTCACCATGCAGGAATTCAGAGTTGGCCTAACAGAATGCTTAGATTTCTTGGGTTTGAATCCTGGCTTCACTGCTCAGGAGCTGTGTGACTGTAGACAAGTTGATGAGCCTCTCTGAGTCTTGGTTTCCTTAACAGCAAAAGGGGGATAATAATTGTAGCTGCGTTATAAGGTTGTTATGAGGACTCTGTGAACAACAGCACGTAAAGGCTATAATACCCCACCACATACACAGGTTTTGCACCACAGCCCACAGGGGGCAGTTCACGTAGACCTCAGAGGTACAGTGACAGTGCAGAGCACGCGCTCAGATAACCCTGACTCAGAGGCGTAGAGGGAGTGCATGTGAGCCAAGCCCAGGACTGCACAGCAGGTGTTCCAGTGGAAGGTCTAGAACGCAAGGGGGGATTCGTTTTGCTGTGTGGGGCAGGAAAAGGTTATTTGGGAAGAACTCCCAGAAGAGGCAACATTTAACAGTCTGTAGATAGGTGGTTAGGAATTCCTCAGCCTGAGCAAAGGTGGTGGGGGTGCCAGGTGAGGGAACGGTATGCACAAAGGCGCGGTGTCTTGAAGCTTCGTGGCACCCCTAGGGAGGGAAGAGGATCTGCAGGGGTGCCATTGGTGTGTGGCAAGATCAGATGCGGGTCCCAAAGATTACACTGGTAGCTTTGGGAGGAGAGGAGGTGAAGGTGGAGAGAAGGCCGAGAAGCCACGTGGGTATCACTGAAACAGTTCTGGCCAACAAGGGTGATGGCAACGACTTTGGAAATGAAGAAAGAAAAGAATGATGAAGAAAAAAAGATGCATCAATCCAGTCGGGCCAGCCCTGCTCAGAGCCTGCTGCAAACAGCCCTGTTTGTGTTGGCTGGTCTGTGCCTCTATTGGTCAGGGTAACTCACCTGCATTTAGCTTGAAGCAAGAACCTAAGGCCAAGTCCTTTTTTCTGACCTCTAATGCAAATGCCCCATATAGATGTAGCATTTTCTGACTTTCCTTAGAAGCTAGAATGATGCTGGGCCCAAATCTGTACCCTTGGATGTTTCGAACTCTCAGCCATGGGCCCTTCACCAAAACTGTAATGTTAATCAACTTCGCACTTCCAACATCCCTCTCCTTTAAGACCCCCACTAATCAGCGAGTTCTCCCAGCATGGCCAGAAGTCCCAGGCATTCAAGGGACATTTGAAAATGTTCTCCACCTGGTAGGTGAGATTCAGGTTTGGTGAATGGAGTTCTGGTGTGAGCCGGGTGCCCCGCCTGCTGGATCTGATGGTATCTCTGGCTGGCCTGTGTGATGGCCCCGGCAGTCGCTCAGCACCTGAAATGTGGCCGGCCCAAATGGAGATGCGAGGCGGGGAGAAACAGTAATCTTCATATGGATCCTGCATTGAAATGAGCATCGTTTGGATCATCGAGTTAAATAAAATGTTATCACAATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000250208:ENST00000505807:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCTTGCTTTGCCAGATG
R:
TGGTCGTGGTGGCGTTTTATT
Band lengths:
348-1222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains