HsaINT1014509 @ hg38
Intron Retention
Gene
ENSG00000204007 | GLT6D1
Description
glycosyltransferase 6 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23671]
Coordinates
chr9:135631431-135639193:-
Coord C1 exon
chr9:135639117-135639193
Coord A exon
chr9:135631479-135639116
Coord C2 exon
chr9:135631431-135631478
Length
7638 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GATTTTCTCTTTGTATCCAGGAA
3' ss Score
8.94
Exon sequences
Seq C1 exon
GAGAGAATGAATTCTAAAAGAATGCTGTTATTGGTTTTATTTGCTTTTTCACTGATGTTGGTTGAGCGTTATTTCAG
Seq A exon
GTAAATATAAAGTATTGATAAATCATGATCTTTAGTGATTGGCAGAGGTGGTTTTAATTTAATTAAATTAATTAATTTAATTTTTGAGACAGGGTCTTACTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCCATATTAGCTCACTGCAGCCTTGACCTCCCAGGCTCAAGTGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACATGTCACCACAAACAACTGATTTTTGAATTTTTTTTGTAGAGACTTATGTTGTCCAGGCTGGCAGAGATAATCTAAACTGCTGAGTTTTGTCCAAAGATATCAATACTACTCTCTAAATAAATCAGAAGTTACTTTCTCTTTGTGGGACAAAGGAAAATATACATATTTTAATTATTTCATTGTTAAACATTCAACAATTATTTACAGAGTGCCTTCTAGGTGCCAGGCTGTATTCTAGGTGCTGGGGATGCAGTGATAATGAAAGTGCCTGTCCTCAGGGAGCTTTCATTCTATTTGGAGAAGGTAGACAATAAATACACATAAAAGACAATGCCAGGGATATAATATTTTATAAAACAAGCATAATAAAAAATAAAGGTGACAATGCCATTTTAGATGAATTATAAACTATCTCAAGTTTCCATCTTTGTGTTTAATATAAATAATACTAAAGGTTCCATCTTTGTGTTTAATGTAAACAAGACTAAAGTCAACCTAATTCTATGCATATAGAAGCATGTGTACTAGAGGACGCATCTGTAAACCTGCTGGTATGGTTTGGCTCTTTCCCCACCCAAATCTCAACTTGAATTGTATCTCCCAGAATTCCCACGTGTTGTGGGAGGGACCCGGGGGAGGTAATTGAATCATGGGGGCTGGTCTTTCCCATGCTATTCTCATGATAGTGAATACGTCTCATGAGATCTGATGGGTTTATCAGGGGTTTCCACTTTTCCGTCTTTCTCATTTTCTCTTGCCGCTGCCATGGAAGACATGCCTTTTGCCTCCTGCCATGATTCTGAGGCCTCCCCAGCCATGTGGAACTGTAAGTCCAATTAAACCTCTTTTTCTTCCCAGTCTTGGGTATGTCTTTATCAGCAGCGTGAAAACAGACTAATACACCTGCTAATATTTTCCCGTCTAGAAAAACTCAAATTCTAGCTTTCTCCATACCACTCCTCATGGTCTTCTTCATAAGCAATGCAGTGTTTCCAGAGGCTATTTGAACAGCAGTAGTATCATGACAGATAATAGTTTTTAAAAATGAAAGCTTTGCACAACATGTATCTGGTAAGGGACTTGTACCCAAAATATGCAAAGAGCTCTTAAAATTCAACAATAAGGAAACAAACACCTAAATTTAAAAATTAAATATTGACATTTAAAACATTTAAAAATGAGCAAAAGAACTGAATAGAATCTCACAAGAGAAGATATACAGATGGGAAATAAGCGAACGCCAAGATGCTCAGTCTCATTTGTCATCAGGAAATTGCAACGAAAACAAGGAGATACCACTACACACCCATTAGAACGGCTAACACCCAAAAATCTAAAATCTGAAAACCAGCTTCTGGTGAGGAAGTGGAAGGACAGGAACTCTCATTCATTGCTGGTGGGAATGCAAAATGTTACAGGTACTGTGGAAGACAGTGTAGCAGTTCCTTAGAAAGCTAGATAGAGCCTTATCATGCCACAGAGCAACTGTGCTCCTAGGCATGTAGCCAACTGATTAAAACACTTATGTCCACACAAACCCTGCACAAGATGTTTATAGAAACTCTATTCATAAATGCCTCAAACCACTAACATACTAGATGCCCTTCAGCAGGTGGATGATAAACAAGCTGTGGTTCATGAAGTGCTCAAAACCAGAAACGAACAAGACGACTTTCAATAGGAGAAGGATAAACATGCTGTGGCTCATCTGTGCAACGGAATAACACCCAACAGTAAAAAGAAATGAGCTGGCCGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAAGCTGAGGAAGGTGGATCACCTGAGGCCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCATCTCTACTATAAATACAAAATTACCTGGGCATGGTGGTGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGATGAATCACTTGAACCTGGGAGGCAGAGGTTGCGGTGAGCTGAGATCACGCCATCGCACTCCAGCTTGGGCAACAAGAGTGAAACTCCATCCCCCCAAAAAAAAGAAAAAAAAGAAATCAGCTATCAAGCTGTTAGAAGACATGGAGGAACCCTAAATGCATATTGCTGAGTGCAAAAAGCCCATCTGAAAAGGCTGCGTGCTGTATAATTCTCATGTGACATTCTGGAAAAGGCAAAACTATATTGGCAGGAAAAAGATCAGTGGTTGCCATGGGGTGGAGGTGAGGGAGGGGATGAATAGGTGAAGCACAAAGGAATTTTGGGGGGCAGTGAAACTGTTCTGTATGACAGTGTAACCATGGACACATGTAACTTTGCATTTGAAAAAAAACCCACAGGACGTTACAGCACGAAGAGTGAAATTAACATATGTAAATTTAAAAAATTAGCTAGGAGGTTCGAGGTATCCTAGGAAGCAATGCAGACTGTGAGAACATAATCTATATCCCAAATGTACAGAACAATCCCACTGGAAGGGGTCAGGGAAAAAGCTGCTGACCTAAAATAACTTAGGAATGAGTGGAGTTTTTTTTGTTTTGTTTTGTTTTGAGACAGAGTCTCACTCTGTCACCCTGACTGGAGTGCAGTAGAGCGATCTCAACTCACCACAACTTCTGCCTCCTTGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGCACATGCCACCAGGCATGGCTAATTTTTTATTTTTAGTAGATATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCTGCCACAGCCTCCCAAAATTCTGGGATTACAGGTGTGAGCCACAGTGCCCAGCTGGGTATGAGTGGAGTTTGAAAGTAAAGGCAATAGAAACTGTACATGAGCACTGTACATGTATTTGGGTCAATAAAGGTTTTTTCCCACAGGAATATGAGTTAACAATTCTGCTGCTGCTATACATGTATATTTGAATCAATTAAATAAATGGATGAGGCATGGGGGAGCAAGTTTCTTGCTGTTGGAGGGAACTTCATAGTTAAGCAAGAGAGGGGGCCACAGTGATCCACGTGGGAATGGATTGAAGCTGGAGACCTCAGCGTGAACTCACGTTTACCTTACTATGAACAGAGACATTTACGTGTCAACGTGTTTAAAGATATGTGGAAATACGCACAGGTTAGTGTCTATTTCCTTGCTCTGTTAGCTGAGAGGGCCTCGGAGGAAGGACACCCTGGAAGCAATGAGCACACCTGGTACCCAGATCTTGGCTTCTAGCACCATTCTCCAGGAAAGCAGCAGATCGTGGTTTCTAGCACCATTCTCCAGGAAAGCAACAGATCTTGGTTTCTAGCACCATTCTCCAGGAAAGCAACAGATCTTGTTTCTAGCACCATTCTCCAGGAAAGCAGCAGACCTTAGTTTCTAGCACCATTCTCCAGGAAAGCAACAGATCTTGGTTTCTGGCACCATTCTCCAGGAAAGCGACCAAGGCTTCTTGGAGAAGTGGATGGTTCTAGATTCGGACAGGAGATTTACAAGATGAGCCCAGAGCATCTCATAGTGCCAGGAGGGATGGAAGGGATTTTTTTTACAAATTCTATATTGAAGGGAGTATGTCACTTAAATGGGACATGGGAGCTAACTGGGAGAGCTCCCGATGGCCAAAGCTGAAGCCTTTTGAGCAAGAAAAGAAAGTAACATTGAATTATAACCCAAAGTATGAAACGAACTTCCACAAGTTCATACTGATGTAAATGAATGATTGGAGGAGCAAAAAGAAGGAAGAAAGGAAGGAAGACAGGTTGGCTGGATGTTGGAAGGATAGAAGGAAGGAAGAAGGGAGAAGAGACAAATCTCCCATATGCAGAAGAATTCCAAATCATGTCTGTAGATTCTCCACTACCAACGACACAGAACCTGACGCCCCAGTCCTGAAGTTTGGGTTGCGCGCAGCGCTTTCTTATAAAGAAAACGGGGAGAAAGAGCAGTCTTTGCGTGGAGAAGCCCGAAAACAGAACCCTAGCCAGGTGAACAAGGTCAGCATCAATAGGAAGTCATGATGGGGTCTGAGAGGCGGCTGCAGTCAAGAGGATCCTGTGCAGACAGGAGGCTGAGTGGAGTGTGGCGTGCTGGGTGGGATCCAGACAGGAGGCTGAGTGGAGTGTGGCATGCTGGGTGGGATCCTGAAAAAAAAAGAGACATTAGGGGAAAACAAGAAAATCCAACCAAAGTATGGACTCTCGTTAACAATACAGCATCAGTGTTGCTTCATGAATTGGAACAAAAGTACCCTACTAAAGCTAGATGTTAATAATAGGAAAAACTGGGTTGGTGCAGGGGATTCCGCATACTAGCTTTAGAACGTTTTTGTAAAGCTGAATCTTCTCTAAAAATAAAGTTGATTGAAACAAAAAAGGGGAAATAAAGTAAAAATAAATCATGCCAAAAAAAAAAAAAAAAAAAAAAGGAAAGGAAAAACAAGGCCAGGCATGGTGGCTTACGCCTGTAATTCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCACTTGAGGTCAGGAGTTGGAGACCAGCTGGCTGACATGGCAAAATCCTGTCTCTTCTAAAAACACCAGAATTAGCAGGGTATGGTGGTGGGCACCTGTAATCTCAGCTACTTGGGAGTCTGAGGCAGGAGAATAGCTTGAATCTGGGAGGCGGAGGTTGCAGTGAGCTGAAATCGCACCACTGCACTCCAGCCTGGGAGACAGAGTGAGACTCTGTCTCAAAAAGCAAAACAAAATGACCACCCCCACTGCTTTGGTGCCATGTATTTTGTGTCATTTGTCCTCCTGGAGGATTGTACCTTAATGAAAAGGATGCATGGCCAGTTATAAAGAGTTTCAGATGCTCTGTTTGAGGATAATGATGGAGTAATCTTCAGCAGAAAGGGGACAGGGACCCATACGCTAATCCATGGCACGGATTCTACCATCTACCCCGGAACCACAGCCAGGGGCCTGGCATGTAGGAGGTGCTCACTCATTATTTGGTAAGAAATGCATAAATAAATGGATCTTGATTCTAGATATTTTGTTGTTGAAATTGCAATGGGTCTTTGTTCAAATTTAAAACTTGAATGATTTTTTTTTCATTTATTTAAAGAATAAGGAGTTATTCACTGGTTGGGTTGATCCATTTAGGAAATAAACATACAGGATGCTCAGTAACATTTGAATTTCAGGGAAACAGTGAATCTTTTTTAGCAGAAGTATGTCCTATGCAATAGTTACACTAAAAATTTATTCATTGCTTATCTTAAACTGAAGAGATGTCCTGTGTTTTGTCTAGCAAACTCCTCTATAGAAAAGGAATCTCAGGCCAGGTGTGGTAGCTCATACCTGTAGTCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAAGTCAGGAGTTTGAGACCAGCCTGGCCCCGTGTCTACTAAAATACAAAAATAAAAAATATTAAAAAAACATTAGCCAGGCGTGGCAGTGGGCACCTGTAATCTGGGCTACTCAGGAGGCTGAAGCAGGAGAATTGCTTAAACCCGGGAGGTGGAGGTTGCAGTGAGTTGAGATCATACCACTGCACTCCAGCCTGGGAGACAGAGCAAGACTGCCTCTCAAAATAAAGATAAAAATAAAAATAAAAGTAGAAAAGTCATCTCAGCCGGCGAGAATATTTGTTGTCTAAATATTCCACAAACTGCAAAGCAAGGCTGGAGGGGGTCAACTGGGTACTAATGGCAAGAGAGGCAGGGGAAACGGCAAACCAAAGACAGCTCTAATCCCTGAAGACACCACTGTCTGCGTATGTGTAGGCTGATTTGTATGTAATGCACGTGTATGTGTGCTTGCGTGTGTGCGTGCACGTGTGTGTGGTGAGCTTGAGGATTTGGGGGTTGATTACAGAAAGGACAGGACAGGCCGTGCGTGGTGGCTCACACCTGTAATCCCAGCACTCTGGGAGGCTGAGGCAGGTGGATCATTTGAGATCAGGAGTTGGAGACCATCCTGGCCAACATTGTGAAACCACATCTCTACTAAAAACACAAAAAATAGCTGGGTGTGGTGGCGTGTGCCTGTAATCCCAGCTACTGGGGGTGCTGAGGCAGGAGAATCACTTGAACCCAAGAGGTGGAGGTTGCGGTGAGCTGAGATTGCGCCACTGCACTCCAGACTGGGCTACAGAGCAAGACTCTGTCTCGAAAAAAAAAAAAAAAAAATCTCTGTCGAGGGTGATTTTTTTCTTTAGGTTACAATAACCCTCTTCAGCCAAGGATGTTCTCTGCTCTGGTCATTCTGCAGGGCCCCAGAAATTAATAAGACCAGCACGGTCAAAGAATGGGGACTTTTTATTAAGTTCCCCCTTTTCGTTTCATGTTTTTGATGAAGTCTGGCATGGACAGTTTGGATTTTGATGAATCTACGCCTGGGGAATCCAATCATGGAATGTCTGTGGCTAAGGATACTCATGATAATGCCAGAAAGGGGGACGGACAGTCTTGAAGTCATTTCTTTCACTTAAAAATATCCCAGGGTTACTATCCTAGGCAACGCAGGGAGACCCTGTCTCTACAAATAATTTAAAAGTTAGCCGGGTGTGATGGCACACCCCTGTGGTCCCAGCTACCTGGGAGGCTGAGGTGGGAGGATTGCTTGAGCTCAGGAGGTTGAGACTGCAGTGAATTGTGATGATGCCACTGCACTCCAGCCTGGGCAGCAGAGTGAGAGCCTGTCTCAAAAAAAAAAAAATTGCTCCCAGGGTTATGAAACAGAGGTTGCCTAATAAGCTTGCTAATTTAATAATTAGCTTAAAAGCACAATTACACTCTAGAAGAACGCAGTGTTGAAATGCAAAGGGAGGTAGCTTGTGCCTGTGGTCCCAGATACTTTGGAGGTTGAGGTGGGAGGATGGCTTGAGCTCAGGGGTTTGAGGCTGCAGTGAGCTATGATCATGCAAGTGAGAACGCATCTCTTAAAATAAATAAATAAAATAAATGCAAACAGAATCAAAGATGAACTTCTGGATGCCTCCTCCCCACCTCTTTACAACATAGAGCAGAACCACTAATGTTTGGTAAATAAATTAATTGAATCTATGTTTTTGTCTGAATATACATTCTCTTAGCTGATCTGTTCATCTCCTTTTATTAAAAAAATCTTCCTCCCAACACTCATACTCTTTCCTGATATTCTGCTTTTGGCCATGACCTCCTTTCCCTACATCTCTTTCCTAGACTAGCTCATACCCTTCCCCACCCAGCTGAGATATCTCTTCTCTGGGAGGCTTCCCCTGACTCTGATTTGGGTTGATGCATGTTGACGAAACACCAAACGGGGCCTGCCTATCACAGGCTCAATAAACATTGAACAGGCTCCTTGCAATCACTTGATTTTCTCTTTGTATCCAG
Seq C2 exon
GAATCACCAAGTAGAAGAACTTCGGCTCTCAGACTGGTTTCATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204007:ENST00000371763:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(15.4=50.0)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains