HsaINT1015503 @ hg38
Intron Retention
Gene
ENSG00000159399 | HK2
Description
hexokinase 2 [Source:HGNC Symbol;Acc:HGNC:4923]
Coordinates
chr2:74882120-74885589:+
Coord C1 exon
chr2:74882120-74882239
Coord A exon
chr2:74882240-74885493
Coord C2 exon
chr2:74885494-74885589
Length
3254 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
TGCTTGTGTGTGATTTTTAGAGC
3' ss Score
8.37
Exon sequences
Seq C1 exon
CTCTTTGACCACATTGTCCAGTGCATCGCGGACTTCCTCGAGTACATGGGCATGAAGGGCGTGTCCCTGCCTCTGGGTTTTACCTTCTCCTTCCCCTGCCAGCAGAACAGCCTGGACGAG
Seq A exon
GTAACAGCACCTTCCTGGAGGGCTCTCCTGTGGGCTTTATTGACTCTAAACAAAACCAGCCAGGTATGGAGCAGGGGAGAAAGTTGAGCTAAGACTAAGGAAAGGAGGGCGTGAGTTACCAGTAGTGGGGAGGGGCTCCTTGATGGGAATGAGTAAGTTGAGGCTGGTGGAGGTTAAGTAGGTTAGCTCAGCTGTGACAGCCTTTGGGACAACGATGATGATGCTACTCAATGTTAACAACTGCCGGGTGTGGTGACTCATACCTGTAATCTCAGCACTTTGGGAGGCTGAGGCAGGAGGATTACTTGAGGCCAGGATTTCAAGACTAGCCTAGGCAACATAGGAAGACCCCATCTCTATTGAACTTATATATATATATATAGCATTTTTAAGCACTTACTGTGTGCCAGGTACTATGTTAGGTTTCTTACCTGCATTATCTCGTTTAACCCTCACAGCAACCATATAAGAGATATGTTTGAATACCCATTCTACAGAAAGGAAGATAAGCCCCACAGAGGTGCTGGGTGTCTTGCTCCAGGTCATAATAGCTTGGGACTGGCCAAGCCAAGATTTGGATTCTGGGTTCCTGATGCCTGAGCCTGTGCTGTCAGTTATGCTGTGGGGCTCCTGAGGCCCTTGTTATGGGCTCAGGGCATTTTCATGCCATATCCTGTTGTTTGGATGCCCTGGCTCTTCTCTGGTCTCATCTTGCTTCTCACTCCTCTTCAGGTTACCTTGGGTGAATGAAGTAGGTGCATGAGGATCTGGCACTCCCAGATGTTCTGGACATGAGTGCCCCGAGAAGTGGAGGAGAACTGAGTAGGCAGTGCTGGATCTGCTGATGACTGGTAGCCCTAAGCATTAGGTATCTGGAGACTGTTTTTAAGCAGTTGTGTCTCTGTCTCAGTCATGTAGGAGTGCACGTGCACGCTGCCGGTGTGTGGTATGTTGCACATGCCACTGCTAGGTATAAAAGGCATGGCTCCTACCTTTAGATGCTTACAAACAAGCTGGGCTGATGAAGCAAGCTCAGAAAAGGAAGAGCTGCTGTTTGGAATGTGGCCCTCGTGGGATGGATACTGAAGCCCCCAGGACAGGTAGTGAGACAGATGTTAATCCGAGTGCATACCTGGGGGATGTCAGGAGGACTTGGAACAAGTCAGAAGAATGAGTTGATGGGAAAGAAAGGTGAGCAGGCTGCCCATTGTGGAGAGGGTCATGTAGGTGGGAGCAAGTGACAGAAAGAGCTGGGCCAGCGCAGAAGAGCCTACCCTAGTGACAAGGAAAGAGCAGCATTTCCCACAGGGTCCCTGCAACAGTGGCCCTCACCTTGGCTTCACTGAGTTTTGTAGATGCCTCCTTCTCCTCCTTATCTGAGAGAATTCCCCATGTGCACTAGTATAATTAAGGTTTTAGGAAGTTCTGCAATAAAAACTCAGCTTAGTCTGGCATTTCTCAACACCTATTAACATTCATGTAGTGTTAACCAGACTAGCGTTGCTTTATGCCTCATGTGGACAAATTCTTATGTACTATTTAATGGACCATTACTTATTATAACAAAGATATTAGAAACAAACTTGCTGAATAGTGAGATAGTAGTTAAATAAATTATGACCCACTTATTAGCTAGTATCAGCCACTAGTTATTTGTAATAAATTTTAATCACATGAAAAATTACTGGTGATATGACTAAAAAGTTTTAAAACTACTTTTCTTTAGAAATGGTAATCTCTTTATAAAAAAACATAAAATACAATTAATGGGATGATAAAAGCATAACCCTCCAGTGTATATCCTTCTTCTAGACTTCCTACCAAAATATTTTCAAGTAGATACTATCTTAACTTTTCATGCCAACAGGTTATATATTTATTTATATATTTGCCAGGGAAACCAGAATGTGTGTTAACTGTTTCTGTCTGAATTGTGAGATTCCAGGCCATTGGATTAGGTTTTATTCTGTGTTCCAGGTTTCTCTGAGGAGCACGTGTTAGGTCTAGAGCCGTAAAAATTAAGAGCAAATAAAGCAGAAGTCATTTCTTCCTGTGGGCTCTGGCAAGACCCTCCTGTGATGGGGAAATCCCACCAGTGCAGAGGCCCCTGGGGTTAGAGACCCCAGGGCTCTGTGGCCCCCAGCTGTGTTTCCCAGCTGTTGGGCCTCCACTTGCCTCATCAGTAAGGATCACCTGAAATTATGTTATTTGAACATCCCGTAAACACAAACTTGCGTCAAACATGTGAAGCTAACTTGTAGAGAGCTGGGTGGAGATCAGCACACACTGGTCAGCCAGCTCTCTGAGGGTATGTGCTTTGTTTTTCTGAATCTCCTGGGGTCTGAACACAGTGTGACACCTCCAGGTTGATGTGAATGAAATGCCAAGCTGATGGGCATGAATCCCTGAGCAAGGCCTGGAGAAATCATGCAAGTGGGTGGGTTATGAGCACACAGCTCATTTATGGAAGCCGAGCTCTTGGGTAAGGAGTCTGAAGCCCTGAGGCTTGTTTCCTGGTGGGCTGTGGCAGCAGAGAGGGCATCAGGGAATAAAACCCAAAGCATTTCTCCCAGGTTCAAAGCCGTCAAGCATCTGCTCCCAGAGGACCACATTGAAGGCAAGGGGCCACTGAGGATGCTGAGGAGGAGCCTGGAGTTGTTTTCCTCACTGAAAGACATGGGGTGGTGGTGAAGCCTAGCTGTCACCCAGCTGTGGGCAAAGCACTTGTTCGCCAGATGCTGGAGTTTGAAAATTAGGAGACATACACTGACCCTTCTGATGTAAAGGATAGGGACAGAGCAAACTGCTTTGCCCAGTGAGCGAACCAAGCACATAGGAAGAAGTTGCACAGCAGGGTCAGCTGCGTGGTGCTTATGAGCCCATTCACTGGGGTCGGAGGGCCTCGGAGTGCATCCTGCTTCTCTCTTCCAAGCTGTAGGCCTTGAGCAAGTCACTCCAGAGCCTCAGTTTCTTATAAAGTGGCCATAAACATGATAGATGTTCCACAAGGGTGCTGTGAGGGTTAAATAATGTAATGCATGATCTATGCTTAGCCCAGTACCTGCTACACAGTAGGTGCTCAATAAATCCAAGTAAGTACCTTAGGAACAGTTTAATTTGCGGGTGAGATGATTGGTGACTCTGGGGGATCCGTCTGACCTGTGAGGTTGAGAGCTAGAAGCACAGCTGGACCCCCAGAACTGACCTGGGAGCTCTTCCCTGATGTCCTTTCCATGCTTGTGTGTGATTTTTAG
Seq C2 exon
AGCATCCTCCTCAAGTGGACAAAAGGCTTCAAGGCATCTGGCTGCGAGGGCGAGGACGTGGTGACCCTGCTGAAGGAAGCGATCCACCGGCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159399:ENST00000290573:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(18.9=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains