HsaINT1015743 @ hg38
Intron Retention
Gene
ENSG00000215612 | HMX1
Description
H6 family homeobox 1 [Source:HGNC Symbol;Acc:HGNC:5017]
Coordinates
chr4:8867048-8871817:-
Coord C1 exon
chr4:8871221-8871817
Coord A exon
chr4:8868346-8871220
Coord C2 exon
chr4:8867048-8868345
Length
2875 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
GTGCCCTCTCTCCCCTGCAGCCA
3' ss Score
11.16
Exon sequences
Seq C1 exon
CCGATCAGCTGTCGGCGCGCACTCGCTCCCGGCCCGGCCCAGCCCAGCCCGGCGCGGAGGCCGCCGCCTGCCCTGCGGGGCCCGACGCCAGCGGTCCGGGTAGCAGCTCCAGGGCCGGCCCGCGCGTGCGCCCGGGAGCCGCGCGCCACCATCCCCAGCGGGGACCGAGGAGCCCGGCCGAGCCCGAGAAGCCCGCGGCCGCGATGCCTGACGAGCTGACGGAGCCCGGGCGCGCCACGCCGGCCCGCGCCTCCTCCTTCCTCATCGAGAACCTGCTGGCGGCCGAGGCCAAGGGCGCAGGGCGCGCGACCCAGGGCGACGGCAGCCGGGAGGACGAGGAGGAGGACGACGACGACCCCGAAGACGAGGACGCCGAGCAGGCGCGGCGGCGACGGCTACAGCGGCGGCGACAGTTGCTCGCGGGCACCGGGCCCGGCGGGGAGGCGCGGGCCCGTGCGCTGCTCGGGCCGGGCGCGCTGGGCCTCGGTCCTCGGCCGCCCCCCGGTCCCGGGCCGCCCTTCGCTCTGGGCTGCGGAGGCGCAGCGCGCTGGTACCCACGGGCGCACGGTGGCTATGGAGGCGGCCTCAGTCCTGACA
Seq A exon
GTGAGTGAGGGCGCGGGGAGGGTGGGTCAGGCGGTGGGGCCCGACTTCCTCCCTGCGCATTTGCTGGGGGACTTCGGGCTCGTCGCCGCCCGTTCTGGGCCATCCTCTCCCTTCTGTGGAACGGCGTCTGGGCCTTGTGGGGCCCCCAGGAGCCCCTGGTTGGGCTGGTTTGGAGGCCCACCCTCTGGGGCAGGAGCTCCGCTAACGAGGAGGTTTTGCAGGCCATAGCTTCACCCATTGCCGGGCTCCTCCGGTCCCAGGGAGGCTGGGGACAGGGGACAACAGGAGGCCAAAGAAAAAAGAAAGGAGAGTGAAAGAGGATAGGGAAAGATACAGGAGAAGGCGAAAGAGGCTGAGAAAGAAAATGGGAGGATGGAGGAAGAAAGGAATGTGCTGCGGGAGAGAGAATGGGGTGGGGGGAGGGGAAGATGCAGGAAAAAGAAACCCAAGAGTGATCCGAGAGAGAAAAGAGGAGGAAGAGATGGAGGGAAAGGGAGACAAAGTAGCATCAGACGTGGAAAAATAAAAGGGGGCATTGAGCAGAGGGTGCAGTGTTGTGGGGGTGGGGCCGGGGAGGGGAGCCATCTAACATGGCAGCTGTGCCCCCCCAGAGTCCTGTTTCCTCTGTGCCCGCTGCAGACAGCCTGGGGCAGGGGCCTGGGTCTCCCTCTTGGTCCTTGAGGGGCATGGGCTGTGCCAGGCAAGAAGGGAGCCTGTTCTGAGGCCCCCAGTCCAACCCCTCTCTCTTCTTTTTCTGCCCCTCCCCCTCCTTGCCTTTGTTCCCTGCTGAGGGCTTGAGACTGGGGCTGGGGGTTCTCAACCCCAGAACCCCTTTGCCCCCTTGCTTGGGTATCTGACCCCTTAGTTCTGCTTCCCCTCCCCAGGGTTCCAGGGTCGCTGCCTCCCTTTTGTACCTGCCCTTTAGGAAGACCCCTGGGAGGAAGGCCAGGAAAGCCAGTCCAACCCCCCAAGCCCTGGCTTAGCCAGCCCCCCACCCCCAACACAGCCTTTGGACCTTGAGGCCAGCTGAGGACGTGGGCCCTCTGCAGGCTCCGGCTCTGGGATCCATGCTGTCCTCTGTATGAATATTAGTGTGTGCTGGGGAGTAAGTGGCCTACGACCCTCACTCACTTGTTAGATAACCCTTTCCATGTCGTGGAGTGATCCTTTGCAAAAGCCCCCACATCTCGGCACCCACACTCAGGAAGTCTAGGCCCCCACCCCCTTCACGTAGACTTGAGCAGGGCTTCCGTGGTTTCCCAGAAATCGAGCGACTCTGTCTAGTGCCCTTCTGGGGGAGACTATGGAAAGGGTTTCTCAGGGTGAAATTTGTTCTCCACTCATCCCTGGGGTGCATCCCCTCCTGCAGCCCAGGTGGCACCCCTGCAGAGGCGGCTCCCCCTTATTTCGTGCCATGCGGGTTAGGGTCCCACTTCCTCACTGGAGCTGGCAAGTCAGCCTAGTGCCTTGTGGCAGCACATGGGCCTCTGTGAGTTTGGGGTATTGGGGGGAGGCAGGGACTCCCCAGATCTAGTAGCATGCACCACAACCTGCTGCCTGACTCCCCTGTGGGTGCTGTGAGGGCACACACCATGGGGATTGGCCACGGGCGTGAGTGGGATGTGCACACTCCTTGGGCATGAGGCACAGAGCTGGAACCACGCACAGAAGCCCACCAGTGTGCGCACCCCTTGCATGAGCGTGCAAATGCTGCAAATACACTGCAGGCACACACCCGGCCGAGTGCACAGCCTTCCAGGGGCCCAGGGCCAGGCCAAACTCTGCCTCCACCTCTAACCTGTCAACCTGGGCCTGCCCTTTGCACGGGAGGCTCCAGACCAAGGCAGAAAAGCAGCGGGTCCGAGTCAGCCTCCAGAGCCCTGCAGTGGGAGGCTGCTGCCCTCTTCAATCTGGGCAAGTGCTTCTGGGTCCCGGCTGGCCTCTTTAACCTGACATCATCCCTTGCCAGCCTGTGGGCCTCTTCTTGTTCCTAGGAGATGAGTAGGGGAGCTTGGTACTTGGAACATGAACTCAGACACCGCCTGTGAGCTTCTGGTTTCAGCCCAAACCCATGAGGCTGAACCTCCAGTCTTGAAAGTGTTTGGGGCAGGACTCAGCTGCTGCATGTTGCTTAGAGTGGCATGTGCCCGTGTTCCCTTTGAGCATGATTGTGGCTGGTGTGGACTTGCCTTGTGGACACTGGGTCAGGGCTACAGGAGTATGTGGTGTGGGGGTGACAGCCTCACCTGATGGGAGTTCTCTTTTGGGGATCCTTTGCATTGGTTTGTCCTCCTACTATGGAATGTTTCTGTGCAAGCGGGCAGAGGGCGCGGGAAGAGGCCTGTGAACTCTTCATTCCTCCTTCTGGGGAGCTTGGCGTGGGGCTGGATGCCAGGTGGCAGGGGGTGTCCTGTGCTTGTTTTTCGGTGTGAACATTTCTCGGAAGGACATCTTTCCTCTTGTCCCGGGACTTCTGCGGGAGGTTTGTGTGTTTTTCCGGGCCGCCCGTGGTGCAGCTGGGAGTGGGGAGTGCTCACTGGGGTCAGCCTGCTTTTCTTGTGTAGTATTTTTGTTTCTTTTCTTTGCTCTGCATCCCTTTGTTGTCCTCTGGCATGGGTGTGCGTTTGTGTTTGTGTGTTGCGGGGTGTTGGTGTGTTGCGGGGTGTTGGTTTGGAGCTGCTGCCTGGTCTCTGGGCCGCCTCCCACGGTTCTGACAATGTGTGCATCCCCAGAGCTGCTGGGTGCCCAGCCCTGTGCTGGAAGGTCTTCCTGCTTGTGGCTGTGAGCGACCTCAAGGTGGGGACGGCTGGCCTCAGTGATTGAGTCTGGTAATCAGTGCCCTAGAACCAACGGTGGTGCCCTCTCTCCCCTGCAG
Seq C2 exon
CCAGCGACCGGGACTCACCGGAGACGGGCGAGGAGATGGGCCGTGCGGAGGGCGCCTGGCCGCGAGGCCCCGGGCCGGGAGCGGTGCAGCGGGAGGCAGCGGAGCTGGCGGCGCGTGGCCCGGCGGCCGGCACGGAGGAGGCGTCGGAGCTGGCCGAGGTCCCTGCGGCGGCTGGGGAGACACGCGGCGGCGTTGGCGTGGGCGGCGGCCGAAAGAAGAAGACGCGCACAGTCTTCTCCCGCAGCCAGGTCTTCCAGCTGGAATCCACCTTCGACCTGAAGCGCTACCTGAGCAGCGCCGAGCGCGCCGGCCTGGCCGCCTCCCTGCAGCTCACCGAGACGCAGGTTAAGATCTGGTTCCAGAACCGCCGCAACAAGTGGAAGCGGCAGCTGGCAGCCGAGCTGGAGGCGGCCAGCCTGTCCCCGCCGGGAGCGCAGCGCCTGGTCCGCGTGCCGGTGCTCTACCACGAAAGCCCCCCGGCCGCAGCCGCCGCTGGGCCCCCGGCCACCCTGCCCTTCCCGCTGGCGCCCGCCGCGCCCGCGCCGCCCCCACCGCTGCTCGGCTTCTCCGGGGCCCTCGCCTACCCGCTGGCCGCCTTCCCGGCCGCCGCCTCCGTGCCCTTTCTGCGGGCGCAGATGCCTGGCCTGGTGTGAGCCCCGCCTGCCGGGCCCTCTCCCCACGACCCTGTGGACCTGTGTGGACGCGCGATTCAGCGGCAGGCGCAGGGCTCAGGGGGCGTTAGGGAAGGGATGGTCGCTCCTGCGGCCTCCTAGATACCTCGGGAGCGCAGGCCGCGGCCGGGCGGGCCTCAGCTTCTGTGGGGAGCGCCTCTAGAATGTAATGGGACGCCCCACCCATTTGCCAGGCTGGATCCCCACTCGAACAGGGGGCCATGCAGAGACTCTGGGCTGCGCAGCCCCCGGCGCCACGGCCACCCCCCGGCCTCAGCGAGGAGCGGTCGGCCATGGCCACCCGGGGCAGCTGCCCTCAGGCCAAGCCCAGCGCAACAAAGGAAAACTACGAACCGGCTGTCCAAGGCTGAGCGGTGACTGTCCCCACAGACTGCCCCCAACACTAAACGTCCCTTTCCTGGGACCCAGACAGCAGGCCGGCCCGGAGGGCTGTGCTACCCCTCTCGCGGGTGCTGGTGGAGAAAGGACCCTGGACCTGTGGGTCCCATCGTCCGTTCCAGGAGCAGGCAGGCTGGGGCTCTCTGCAGACGTCGCAGCCTCCGGGTTGTTGTTTTTTTAAATGAATCTACTTATTTGCGTATGGAATAAAAAGGGACATTTTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215612:ENST00000400677:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=NA C2=0.382
Domain overlap (PFAM):
C1:
PF086195=Nha1_C=PU(65.4=80.3)
A:
NA
C2:
PF086195=Nha1_C=PD(34.0=25.2),PF0004624=Homeobox=WD(100=26.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains