HsaINT1017164 @ hg38
Intron Retention
Gene
ENSG00000157551 | KCNJ15
Description
potassium voltage-gated channel subfamily J member 15 [Source:HGNC Symbol;Acc:HGNC:6261]
Coordinates
chr21:38256741-38257185:+
Coord C1 exon
chr21:38256741-38256787
Coord A exon
chr21:38256788-38257045
Coord C2 exon
chr21:38257046-38257185
Length
258 bp
Sequences
Splice sites
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
3' ss Seq
AACTTGTTTTTGACTGACAGTGA
3' ss Score
5.45
Exon sequences
Seq C1 exon
AGGTGTTTGGAGAGCCCGGACTGGATGCCCACTAGAATCCTGTGCTG
Seq A exon
GTTTGTAGATTTCCTTAAGACCTTAAGACATGCTGACATCATGGTCTCCTTTCTCAGATTCCTTCTCTCTTTTTCTCTTTCTCCCCCACTCTCTCTCTCTGTCTCTCACTTTCTCTCCTTTCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTATCCCTCCCTCCTCTGCCCAATGTCTCCCAATCTCTTTCCTTTCTCTCTTCAGTTCCTCCAGGTAATTCTTACTCAAACTTGTACCAACTTGTTTTTGACTGACAG
Seq C2 exon
TGAACAGTGAGAGAGTTTTCTTCATTTTGAGGAACCCTAAACACCTATCTTTCCCAAGGCAACCTGTCTGGACTGAGCATTTCTCTGACTTGACATAACTTCCCATCCAGCCAGGAGTCTGCACTCTTCAGTCTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157551:ENST00000328656:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGGAGAGCCCGGACTG
R:
TGCAAAGACTGAAGAGTGCAGA
Band lengths:
183-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains